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Aliases for ENSG00000271742 Gene

Quality Score for this RNA gene is

13

Aliases for ENSG00000271742 Gene

  • Novel Transcript 5
  • AL121992.2 5

External Ids for ENSG00000271742 Gene

Previous GeneCards Identifiers for ENSG00000271742 Gene

  • GC01M016009

Summaries for ENSG00000271742 Gene

GeneCards Summary for ENSG00000271742 Gene

ENSG00000271742 is an RNA Gene.

Additional gene information for ENSG00000271742 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ENSG00000271742 Gene

Genomics for ENSG00000271742 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000271742 Gene

Promoters and enhancers for ENSG00000271742 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J015678 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 600.7 +0.7 748 8 ZFX ELF3 NKRF POLR2A ZNF384 ZBTB7A YY1 PRDM1 MLLT1 ZNF639 PLEKHM2 ENSG00000271742 SPEN CROCCP3 CASP9 SLC25A34 LINC01772 CROCCP2 ZBTB17 RPL22P3
GH01J015674 Enhancer 1.1 Ensembl ENCODE 0.4 +7.3 7327 4.4 CBFA2T2 TRIM24 SMARCA4 DPF2 IKZF1 PHF21A ZEB2 LEF1 HDAC1 ZNF239 ENSG00000237938 CROCCP3 SPEN CASP9 LINC01772 ZBTB17 SZRD1 FBLIM1 ENSG00000178715 RPL22P3
GH01J015668 Enhancer 0.5 Ensembl 0.4 +14.4 14427 1.4 POLR2A NFIC HNF4A POU5F1 PIR34126 SLC25A34 FBLIM1 SCARNA21B GC01P015666 ENSG00000271742 DDI2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000271742 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000271742 Gene

Genomic Locations for ENSG00000271742 Gene
chr1:15,682,873-15,683,128
(GRCh38/hg38)
Size:
256 bases
Orientation:
Minus strand
chr1:16,009,368-16,009,623
(GRCh37/hg19)
Size:
256 bases
Orientation:
Minus strand

Genomic View for ENSG00000271742 Gene

Genes around ENSG00000271742 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000271742 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000271742 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000271742 Gene

Proteins for ENSG00000271742 Gene

Post-translational modifications for ENSG00000271742 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000271742 Gene

Domains & Families for ENSG00000271742 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ENSG00000271742 Gene

Function for ENSG00000271742 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000271742 Gene

Localization for ENSG00000271742 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000271742 Gene

Pathways & Interactions for ENSG00000271742 Gene

PathCards logo

SuperPathways for ENSG00000271742 Gene

No Data Available

Interacting Proteins for ENSG00000271742 Gene

Gene Ontology (GO) - Biological Process for ENSG00000271742 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ENSG00000271742 Gene

Drugs & Compounds for ENSG00000271742 Gene

No Compound Related Data Available

Transcripts for ENSG00000271742 Gene

mRNA/cDNA for ENSG00000271742 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000271742 Gene

No ASD Table

Relevant External Links for ENSG00000271742 Gene

GeneLoc Exon Structure for
ENSG00000271742

Expression for ENSG00000271742 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ENSG00000271742 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000271742 Gene

This gene is overexpressed in Muscle - Skeletal (x6.9) and Testis (x6.1).
genes like me logo Genes that share expression patterns with ENSG00000271742: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000271742 Gene

Orthologs for ENSG00000271742 Gene

Evolution for ENSG00000271742 Gene

ENSEMBL:
Gene Tree for ENSG00000271742 (if available)
TreeFam:
Gene Tree for ENSG00000271742 (if available)

No data available for Orthologs for ENSG00000271742 Gene

Paralogs for ENSG00000271742 Gene

No data available for Paralogs for ENSG00000271742 Gene

Variants for ENSG00000271742 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000271742 Gene

Disorders for ENSG00000271742 Gene

No disorders were found for ENSG00000271742 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000271742 Gene

Publications for ENSG00000271742 Gene

No publications were found for ENSG00000271742 Gene.

No data available for External Links for ENSG00000271742 Gene

Products for ENSG00000271742 Gene

Sources for ENSG00000271742 Gene

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