Aliases for ENSG00000271717 Gene

Subcategory (RNA class) for ENSG00000271717 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for ENSG00000271717 Gene

  • Novel Transcript, Antisense To CERS4 5
  • HSALNG0123717 164
  • Lnc-CD320-3 165
  • AC022146.2 5

External Ids for ENSG00000271717 Gene

Previous GeneCards Identifiers for ENSG00000271717 Gene

  • GC19M008287

Summaries for ENSG00000271717 Gene

GeneCards Summary for ENSG00000271717 Gene

ENSG00000271717 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000271717 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000271717 Gene

Genomics for ENSG00000271717 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000271717 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J008239 Promoter/Enhancer 1.7 Ensembl ENCODE CraniofacialAtlas dbSUPER 600.7 -0.8 -776 2 SP1 HNRNPL GATAD2A PRDM10 ZNF629 TFE3 LEF1 IKZF1 ZNF692 BACH1 ENSG00000271717 LOC107985282 HNRNPM ZNF558 ELAVL1 ZNF317 XAB2 ENSG00000269300 ZNF414 MAP2K7
GH19J008237 Enhancer 0.3 dbSUPER 600.7 +1.3 1250 1.3 RBM22 CEBPB ENSG00000271717 CERS4 piR-43104-030 lnc-RPS28-4 CD320 lnc-KANK3-3
GH19J008224 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.4 +14.9 14885 1.1 REST NFIC KLF17 HNF4A GLIS1 KLF1 SP1 ATF1 CERS4 piR-43104-030 ENSG00000271717 lnc-RPS28-4 CD320 lnc-KANK3-3
GH19J008226 Enhancer 0.4 Ensembl 0.4 +12.1 12081 1.5 NR2F1 ATF3 HLF MAX piR-43104-030 CERS4 ENSG00000271717 lnc-RPS28-4 CD320 lnc-KANK3-3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000271717 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000271717 Gene

Genomic Locations for ENSG00000271717 Gene
chr19:8,222,153-8,239,648
(GRCh38/hg38)
Size:
17,496 bases
Orientation:
Minus strand
chr19:8,287,037-8,304,532
(GRCh37/hg19)
Size:
17,496 bases
Orientation:
Minus strand

Genomic View for ENSG00000271717 Gene

Genes around ENSG00000271717 on UCSC Golden Path with GeneCards custom track
ENSG00000271717 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000271717 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000271717 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000271717 Gene

Proteins for ENSG00000271717 Gene

Post-translational modifications for ENSG00000271717 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000271717 Gene

Domains & Families for ENSG00000271717 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000271717 Gene

Function for ENSG00000271717 Gene

Phenotypes From GWAS Catalog for ENSG00000271717 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000271717 Gene

Localization for ENSG00000271717 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000271717 Gene

Pathways & Interactions for ENSG00000271717 Gene

PathCards logo

SuperPathways for ENSG00000271717 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000271717 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000271717 Gene

Drugs & Compounds for ENSG00000271717 Gene

No Compound Related Data Available

Transcripts for ENSG00000271717 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000271717 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000056DDEA_9606 lncRNA 348 3

Ensembl: ENST00000605980 (view in UCSC) ,

LncBook: HSALNT0255346,

LNCipedia: lnc-CD320-3:1,

ENSG00000271717 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000271717 Gene

No ASD Table

Relevant External Links for ENSG00000271717 Gene

GeneLoc Exon Structure for
ENSG00000271717

No data available for mRNA/cDNA for ENSG00000271717 Gene

Expression for ENSG00000271717 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000271717 Gene

genes like me logo Genes that share expression patterns with ENSG00000271717: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000271717 Gene

Orthologs for ENSG00000271717 Gene

Evolution for ENSG00000271717 Gene

ENSEMBL:
Gene Tree for ENSG00000271717 (if available)
TreeFam:
Gene Tree for ENSG00000271717 (if available)

No data available for Orthologs for ENSG00000271717 Gene

Paralogs for ENSG00000271717 Gene

No data available for Paralogs for ENSG00000271717 Gene

Variants for ENSG00000271717 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000271717 Gene

Disorders for ENSG00000271717 Gene

Additional Disease Information for ENSG00000271717

No disorders were found for ENSG00000271717 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000271717 Gene

Publications for ENSG00000271717 Gene

No publications were found for ENSG00000271717 Gene.

No data available for Mastermind for ENSG00000271717 Gene

Products for ENSG00000271717 Gene

Sources for ENSG00000271717 Gene