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Aliases for ENSG00000271654 Gene
External Ids for ENSG00000271654 Gene
- Ensembl: ENSG00000271654
Previous GeneCards Identifiers for ENSG00000271654 Gene
- GC08M018245
Summaries for ENSG00000271654 Gene
GeneCards Summary for ENSG00000271654 Gene
ENSG00000271654 is a Pseudogene.
Additional gene information for ENSG00000271654 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000271654 Gene
Genomics for ENSG00000271654 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for ENSG00000271654 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH08J018386 | Promoter/Enhancer | 1.3 | Ensembl ENCODE CraniofacialAtlas | 600.7 | +0.5 | 501 | 1.4 | CTCF MGA YY1 MYC POLR2A NR2F2 RAD21 GABPA ZNF143 ZBTB33 | NAT2 ENSG00000271654 ENSG00000285624 lnc-PSD3-2 lnc-PSD3-5 PSD3 | |
| GH08J019199 | Enhancer | 1.2 | FANTOM5 Ensembl ENCODE dbSUPER | 4.9 | -813.2 | -813224 | 4.4 | FOXA1 SP1 JUND CEBPB NR3C1 ATF3 FOS YY1 GATA3 RAD21 | PSD3 SH2D4A ENSG00000271654 piR-31534-643 ENSG00000250316 lnc-SH2D4A-4 LOC100128993 ENSG00000253557 | |
| GH08J019093 | Enhancer | 1.1 | FANTOM5 ENCODE dbSUPER | 4.8 | -707.7 | -707738 | 4.6 | PRDM10 ZNF629 SP1 ZNF600 TSHZ1 CEBPB ZSCAN5C OSR2 FOS WT1 | ENSG00000271654 ENSG00000254242 LOC105379301 PSD3 piR-33804-104 ENSG00000253557 SH2D4A |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around ENSG00000271654 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for ENSG00000271654 Gene
Genomic Locations for ENSG00000271654 Gene
- chr8:18,387,108-18,387,777
- (GRCh38/hg38)
- Size:
- 670 bases
- Orientation:
- Minus strand
- chr8:18,244,618-18,245,287
- (GRCh37/hg19)
- Size:
- 670 bases
- Orientation:
- Minus strand
Genomic View for ENSG00000271654 Gene
Genes around ENSG00000271654 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 8p22 by Ensembl
ENSG00000271654 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
No data available for RefSeq DNA sequence for ENSG00000271654 Gene
Proteins for ENSG00000271654 Gene
Post-translational modifications for ENSG00000271654 Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for ENSG00000271654
- Origene Custom Protein Services for ENSG00000271654
No data available for DME Specific Peptides for ENSG00000271654 Gene
Domains & Families for ENSG00000271654 Gene
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000271654 Gene
Function for ENSG00000271654 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
CRISPR Products
- Browse CRISPR knockouts for ENSG00000271654
miRNA Products
Inhibitory RNA Products
Clone Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000271654 Gene
Localization for ENSG00000271654 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000271654 Gene
Transcripts for ENSG00000271654 Gene
mRNA/cDNA for ENSG00000271654 Gene
- 1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
-
- ENST00000605477 670 nts (view in UCSC)
CRISPR Products
- Browse CRISPR knockouts for ENSG00000271654
miRNA Products
Inhibitory RNA Products
Clone Products
Relevant External Links for ENSG00000271654 Gene
- GeneLoc Exon Structure for
- ENSG00000271654
Expression for ENSG00000271654 Gene
mRNA differential expression in normal tissues according to GTEx for ENSG00000271654 Gene
This gene is overexpressed in Liver (x19.0).
Primer Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000271654 Gene
Orthologs for ENSG00000271654 Gene
No data available for Orthologs for ENSG00000271654 Gene
Paralogs for ENSG00000271654 Gene
No data available for Paralogs for ENSG00000271654 Gene
Variants for ENSG00000271654 Gene
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000271654 Gene
Disorders for ENSG00000271654 Gene
No disorders were found for ENSG00000271654 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000271654 Gene
Publications for ENSG00000271654 Gene
No publications were found for ENSG00000271654 Gene.
No data available for Mastermind for ENSG00000271654 Gene
Products for ENSG00000271654 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for ENSG00000271654
- Origene Custom Protein Services for ENSG00000271654
- Browse OriGene Inhibitory RNA Products For ENSG00000271654
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for ENSG00000271654
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For ENSG00000271654
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for ENSG00000271654
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for ENSG00000271654
- Search GeneCopoeia for miRNA 3'UTR Target clone products for ENSG00000271654
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for ENSG00000271654
Sources for ENSG00000271654 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) Genetics Home Reference
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNACentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Signalway Antibody
- (175) Open Targets Platform
- (176) 5SRRNADB
- (177) snoDB
- (178) MirGeneDB