Aliases for ENSG00000271390 Gene

Data sources for ENSG00000271390 Gene:

RNA type for ENSG00000271390 Gene

lncRNA

Aliases for ENSG00000271390 Gene

External Ids for ENSG00000271390 Gene

Previous GeneCards Identifiers for ENSG00000271390 Gene

  • GC11M110960

Summaries for ENSG00000271390 Gene

GeneCards Summary for ENSG00000271390 Gene

ENSG00000271390 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000271390 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000271390 Gene

Genomics for ENSG00000271390 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000271390 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J111091 Enhancer 0.4 Ensembl 250.7 +0.3 267 0.2 SPI1 GATA2 CHD2 ENSG00000271390 HSALNG0087077 C11orf53 ARHGAP20
GH11J111090 Enhancer 0.2 ENCODE 250.7 -0.8 -755 0.8 ENSG00000271390 LINC02550 ENSG00000287028 C11orf53 ARHGAP20
GH11J110427 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 4.9 +658.7 658716 7.5 BCLAF1 ZNF654 ZNF207 IKZF1 MYC ZNF592 POLR2A ZIC2 NONO CTCF FDX1 5MWI_A-027 ENSG00000271390 HSALNG0087058 lnc-RDX-5 HSALNG0087060 ARHGAP20
GH11J111594 Enhancer 0.3 Ensembl 11.5 -504.5 -504533 0.2 MCM3 SPI1 LINC02550 ENSG00000271390 PPP2R1B SIK2 HSALNG0087120 LAYN
GH11J111086 Enhancer 0.4 Ensembl 0.7 +4.2 4167 0.4 SIN3A SMAD4 TFAP4 LINC02550 ENSG00000271390 HSALNG0087077 C11orf53 ARHGAP20
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000271390 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000271390 Gene

Latest Assembly
chr11:111,089,869-111,090,368
(GRCh38/hg38)
Size:
500 bases
Orientation:
Minus strand

Previous Assembly
chr11:110,960,594-110,961,092
(GRCh37/hg19 by Ensembl)
Size:
499 bases
Orientation:
Minus strand

Genomic View for ENSG00000271390 Gene

Genes around ENSG00000271390 on UCSC Golden Path with GeneCards custom track
ENSG00000271390 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000271390 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000271390 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000271390 Gene

Proteins for ENSG00000271390 Gene

Post-translational modifications for ENSG00000271390 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000271390 Gene

Domains & Families for ENSG00000271390 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000271390 Gene

Function for ENSG00000271390 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000271390 Gene

Localization for ENSG00000271390 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000271390 Gene

Pathways & Interactions for ENSG00000271390 Gene

PathCards logo

SuperPathways for ENSG00000271390 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000271390 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000271390 Gene

Drugs & Compounds for ENSG00000271390 Gene

No Compound Related Data Available

Transcripts for ENSG00000271390 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000271390 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00002FE815_9606 lncRNA 500 3

Ensembl: ENST00000604700 (view in UCSC) ,

LNCipedia: LINC02550:15,

NONCODE: NONHSAT024086.2,

URS0000D5AE37_9606 lncRNA 2514 2

LncBook: HSALNT0180993,

LNCipedia: LINC02550:10,

URS0001BECF6C_9606 lncRNA 3371 1

LncBook: HSALNT0180991,

URS0001BEDB12_9606 lncRNA 2512 1

LncBook: HSALNT0180993,

URS0001BF8EE1_9606 lncRNA 1104 1

LncBook: HSALNT0180995,

ENSG00000271390 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000271390 Gene

No ASD Table

Relevant External Links for ENSG00000271390 Gene

GeneLoc Exon Structure for
ENSG00000271390

No data available for mRNA/cDNA for ENSG00000271390 Gene

Expression for ENSG00000271390 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000271390 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000271390 Gene

This gene is overexpressed in Testis (x4.6).
genes like me logo Genes that share expression patterns with ENSG00000271390: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000271390 Gene

Orthologs for ENSG00000271390 Gene

Evolution for ENSG00000271390 Gene

ENSEMBL:
Gene Tree for ENSG00000271390 (if available)
TreeFam:
Gene Tree for ENSG00000271390 (if available)

No data available for Orthologs for ENSG00000271390 Gene

Paralogs for ENSG00000271390 Gene

No data available for Paralogs for ENSG00000271390 Gene

Variants for ENSG00000271390 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000271390 Gene

Disorders for ENSG00000271390 Gene

Additional Disease Information for ENSG00000271390

Open Targets Platform
Open Targets Platform

No disorders were found for ENSG00000271390 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000271390 Gene

Publications for ENSG00000271390 Gene

No publications were found for ENSG00000271390 Gene.

No data available for Mastermind for ENSG00000271390 Gene

Products for ENSG00000271390 Gene

Sources for ENSG00000271390 Gene