Aliases for ENSG00000271200 Gene

Subcategory (RNA class) for ENSG00000271200 Gene

lncRNA

Number of RNA Genes sources:

2 / 14

Aliases for ENSG00000271200 Gene

  • Novel Transcript 5
  • NONHSAG001668 92
  • Lnc-TM2D1-4 168
  • AC099791.2 5

External Ids for ENSG00000271200 Gene

Previous GeneCards Identifiers for ENSG00000271200 Gene

  • GC01M062207

Summaries for ENSG00000271200 Gene

GeneCards Summary for ENSG00000271200 Gene

ENSG00000271200 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000271200 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000271200 Gene

Genomics for ENSG00000271200 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000271200 Gene

Promoters and enhancers for ENSG00000271200 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J061741 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE CraniofacialAtlas 500.7 -0.6 -637 3.5 ZBTB40 MYC POLR2G PHF8 ZFX ZIC2 POLR2A ZBTB10 ZNF423 ZBTB26 PATJ ENSG00000271200 TM2D1 RF00017-228
GH01J061076 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 28.9 +661.0 661023 11.2 FOXK2 CTCF ZSCAN5C NRF1 MYC TCF12 ZNF300 POLR2G USF1 SP1 NFIA HSALNG0004017 ENSG00000271200 NFIA-AS1 NONHSAG001659.2
GH01J062356 Enhancer 1.2 FANTOM5 Ensembl ENCODE 36.6 -612.3 -612276 5.8 RBAK ZNF623 TRIM28 ZNF510 ZEB1 OSR2 ZNF266 WT1 ZBTB17 ZNF184 USP1 ENSG00000271200 TM2D1 DOCK7 KANK4 RNU6-371P HSALNG0004061 piR-50443-019
GH01J061253 Promoter/Enhancer 1.7 Ensembl ENCODE CraniofacialAtlas dbSUPER 18.4 +487.8 487830 3.2 ZSCAN5C USF1 ZNF639 POLR2A TARDBP MYC EP300 CTBP1 ATF2 TAF9B NFIA-AS1 ENSG00000271200 lnc-PATJ-2 NFIA
GH01J061012 Enhancer 1.4 FANTOM5 Ensembl ENCODE 10.7 +728.9 728923 3.8 PHB2 ZNF263 ZBTB11 AFF1 TARDBP REST TOE1 MYC CTBP1 TAF9B ENSG00000271200 NFIA NFIA-AS2 lnc-TM2D1-6
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000271200 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000271200 Gene

Genomic Locations for ENSG00000271200 Gene
chr1:61,741,998-61,742,424
(GRCh38/hg38)
Size:
427 bases
Orientation:
Minus strand
chr1:62,207,670-62,208,096
(GRCh37/hg19)
Size:
427 bases
Orientation:
Minus strand

Genomic View for ENSG00000271200 Gene

Genes around ENSG00000271200 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000271200 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000271200 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000271200 Gene

Proteins for ENSG00000271200 Gene

Post-translational modifications for ENSG00000271200 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000271200 Gene

Domains & Families for ENSG00000271200 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000271200 Gene

Function for ENSG00000271200 Gene

Phenotypes From GWAS Catalog for ENSG00000271200 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000271200 Gene

Localization for ENSG00000271200 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000271200 Gene

Pathways & Interactions for ENSG00000271200 Gene

PathCards logo

SuperPathways for ENSG00000271200 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ENSG00000271200 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000271200 Gene

Drugs & Compounds for ENSG00000271200 Gene

No Compound Related Data Available

Transcripts for ENSG00000271200 Gene

mRNA/cDNA for ENSG00000271200 Gene

1 RNACentral transcripts :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 NONCODE transcripts :
1 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000271200 Gene

No ASD Table

Relevant External Links for ENSG00000271200 Gene

GeneLoc Exon Structure for
ENSG00000271200

Expression for ENSG00000271200 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000271200 Gene

genes like me logo Genes that share expression patterns with ENSG00000271200: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000271200 Gene

Orthologs for ENSG00000271200 Gene

Evolution for ENSG00000271200 Gene

ENSEMBL:
Gene Tree for ENSG00000271200 (if available)
TreeFam:
Gene Tree for ENSG00000271200 (if available)

No data available for Orthologs for ENSG00000271200 Gene

Paralogs for ENSG00000271200 Gene

No data available for Paralogs for ENSG00000271200 Gene

Variants for ENSG00000271200 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000271200 Gene

Disorders for ENSG00000271200 Gene

No disorders were found for ENSG00000271200 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000271200 Gene

Publications for ENSG00000271200 Gene

No publications were found for ENSG00000271200 Gene.

No data available for Mastermind for ENSG00000271200 Gene

Products for ENSG00000271200 Gene

Sources for ENSG00000271200 Gene