Aliases for ENSG00000271009 Gene

Subcategory (RNA class) for ENSG00000271009 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000271009 Gene

  • Novel Transcript 5
  • NONHSAG019950.2 91
  • HSALNG0112602 164
  • Lnc-DHX38-40 165
  • AC116667.1 5

External Ids for ENSG00000271009 Gene

Previous GeneCards Identifiers for ENSG00000271009 Gene

  • GC16P073095

Summaries for ENSG00000271009 Gene

GeneCards Summary for ENSG00000271009 Gene

ENSG00000271009 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000271009 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000271009 Gene

Genomics for ENSG00000271009 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000271009 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J073045 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 6.3 -6.1 -6109 15.8 ZNF221 HNRNPL CREB1 GATAD2A ATF7 PRDM10 ZNF629 REST TFE3 SOX13 ZFHX3 MN297387 DHX38 PMFBP1 ENSG00000259209 ENSG00000271009 MN297388 lnc-PMFBP1-7 lnc-DHX38-29 LOC107984814
GH16J073062 Promoter/Enhancer 2.3 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 5.6 +7.3 7316 9.8 ZNF221 CREB1 GATAD2A ZBTB33 ATF7 TEAD4 PRDM10 ZNF629 TFE3 SOX13 MN297389 DHX38 PMFBP1 ZFHX3 ENSG00000271009 TXNL4B LOC107984814
GH16J072148 Enhancer 0.5 Ensembl 5 -910.1 -910100 2 CTCF CEBPA CEBPB CEBPG RAD21 EBF1 NFIL3 HLF SMC3 PMFBP1 HPR DHODH HP ENSG00000271009 MARVELD3 piR-45035-081 piR-34822-122 TXNL4B
GH16J073454 Enhancer 0.2 Ensembl 5.4 +395.0 395000 1.4 ENSG00000271009 lnc-CLEC18B-9 piR-31199-130 LINC01568 ZFHX3 lnc-CLEC18B-44 LOC107984814
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000271009 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000271009 Gene

Genomic Locations for ENSG00000271009 Gene
chr16:73,059,901-73,062,316
(GRCh38/hg38)
Size:
2,416 bases
Orientation:
Plus strand
chr16:73,094,369-73,096,215
(GRCh37/hg19)
Size:
1,847 bases
Orientation:
Plus strand

Genomic View for ENSG00000271009 Gene

Genes around ENSG00000271009 on UCSC Golden Path with GeneCards custom track
ENSG00000271009 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000271009 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000271009 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000271009 Gene

Proteins for ENSG00000271009 Gene

Post-translational modifications for ENSG00000271009 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000271009 Gene

Domains & Families for ENSG00000271009 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000271009 Gene

Function for ENSG00000271009 Gene

Phenotypes From GWAS Catalog for ENSG00000271009 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000271009 Gene

Localization for ENSG00000271009 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000271009 Gene

Pathways & Interactions for ENSG00000271009 Gene

PathCards logo

SuperPathways for ENSG00000271009 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000271009 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000271009 Gene

Drugs & Compounds for ENSG00000271009 Gene

No Compound Related Data Available

Transcripts for ENSG00000271009 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000271009 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000BD10F9_9606 lncRNA 2072 3

Ensembl: ENST00000604855 (view in UCSC) ,

LncBook: HSALNT0233362,

LNCipedia: lnc-DHX38-40:3,

URS00008B5B04_9606 lncRNA 1937 2

LNCipedia: lnc-DHX38-40:4,

NONCODE: NONHSAT143628.2,

URS00008BC3E2_9606 lncRNA 1822 2

LNCipedia: lnc-DHX38-40:1,

NONCODE: NONHSAT143627.2,

URS00005FC291_9606 lncRNA 1847 1

LNCipedia: lnc-DHX38-40:5,

URS0000266740_9606 lncRNA 515 1

LNCipedia: lnc-DHX38-40:2,

ENSG00000271009 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000271009 Gene

No ASD Table

Relevant External Links for ENSG00000271009 Gene

GeneLoc Exon Structure for
ENSG00000271009

No data available for mRNA/cDNA for ENSG00000271009 Gene

Expression for ENSG00000271009 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000271009 Gene

Orthologs for ENSG00000271009 Gene

Evolution for ENSG00000271009 Gene

ENSEMBL:
Gene Tree for ENSG00000271009 (if available)
TreeFam:
Gene Tree for ENSG00000271009 (if available)

No data available for Orthologs for ENSG00000271009 Gene

Paralogs for ENSG00000271009 Gene

No data available for Paralogs for ENSG00000271009 Gene

Variants for ENSG00000271009 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000271009 Gene

Disorders for ENSG00000271009 Gene

No disorders were found for ENSG00000271009 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000271009 Gene

Publications for ENSG00000271009 Gene

No publications were found for ENSG00000271009 Gene.

No data available for Mastermind for ENSG00000271009 Gene

Products for ENSG00000271009 Gene

Sources for ENSG00000271009 Gene