Aliases for ENSG00000270720 Gene

Subcategory (RNA class) for ENSG00000270720 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000270720 Gene

  • Novel Transcript 5
  • NONHSAG038414.2 91
  • HSALNG0035777 164
  • Lnc-TIGD2-8 165
  • Lnc-TIGD2-2 165
  • AC104785.1 5

External Ids for ENSG00000270720 Gene

Previous GeneCards Identifiers for ENSG00000270720 Gene

  • GC04P090040

Summaries for ENSG00000270720 Gene

GeneCards Summary for ENSG00000270720 Gene

ENSG00000270720 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000270720 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000270720 Gene

Genomics for ENSG00000270720 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000270720 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J089110 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas 605.1 +0.8 761 3.9 CEBPG SP1 CREB1 GATAD2A CTCF HNRNPL ATF7 PRDM10 TFE3 LEF1 TIGD2 ENSG00000270720 FAM13A lnc-TIGD2-2 lnc-TIGD2-9 GPRIN3
GH04J089109 Enhancer 0.3 CraniofacialAtlas 600.7 -1.5 -1519 0.4 POLR2A SMARCA4 ENSG00000270720 FAM13A TIGD2 lnc-TIGD2-2 piR-31199-269 NAP1L5
GH04J088455 Promoter/Enhancer 2.2 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas 22.3 -654.3 -654299 3.9 ZNF221 GATAD2A CTCF PRDM10 REST ZNF629 IKZF1 NFKBIZ ZNF692 BACH1 HERC5 lnc-PYURF-3 ENSG00000270720 HERC6 LOC102723458 PIGY PYURF
GH04J089119 Enhancer 0.3 Ensembl 0.4 +8.3 8332 0.6 FOS lnc-TIGD2-9 TIGD2 ENSG00000270720 FAM13A GPRIN3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000270720 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000270720 Gene

Genomic Locations for ENSG00000270720 Gene
chr4:89,111,569-89,120,068
(GRCh38/hg38)
Size:
8,500 bases
Orientation:
Plus strand
chr4:90,040,435-90,041,022
(GRCh37/hg19)
Size:
588 bases
Orientation:
Plus strand

Genomic View for ENSG00000270720 Gene

Genes around ENSG00000270720 on UCSC Golden Path with GeneCards custom track
ENSG00000270720 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000270720 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000270720 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000270720 Gene

Proteins for ENSG00000270720 Gene

Post-translational modifications for ENSG00000270720 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000270720 Gene

Domains & Families for ENSG00000270720 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000270720 Gene

Function for ENSG00000270720 Gene

Phenotypes From GWAS Catalog for ENSG00000270720 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000270720 Gene

Localization for ENSG00000270720 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000270720 Gene

Pathways & Interactions for ENSG00000270720 Gene

PathCards logo

SuperPathways for ENSG00000270720 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000270720 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000270720 Gene

Drugs & Compounds for ENSG00000270720 Gene

No Compound Related Data Available

Transcripts for ENSG00000270720 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000270720 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00001166D1_9606 lncRNA 588 3

Ensembl: ENST00000603220 (view in UCSC) ,

LNCipedia: lnc-TIGD2-8:1,

NONCODE: NONHSAT097382.2,

URS0000D59983_9606 lncRNA 2826 2

LncBook: HSALNT0074867,

LNCipedia: lnc-TIGD2-2:8,

URS0000D5791A_9606 lncRNA 5394 1

LNCipedia: lnc-TIGD2-2:10,

ENSG00000270720 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000270720 Gene

No ASD Table

Relevant External Links for ENSG00000270720 Gene

GeneLoc Exon Structure for
ENSG00000270720

No data available for mRNA/cDNA for ENSG00000270720 Gene

Expression for ENSG00000270720 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000270720 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000270720 Gene

This gene is overexpressed in Liver (x5.1), Brain - Cerebellar Hemisphere (x4.5), and Brain - Cerebellum (x4.2).
genes like me logo Genes that share expression patterns with ENSG00000270720: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000270720 Gene

Orthologs for ENSG00000270720 Gene

Evolution for ENSG00000270720 Gene

ENSEMBL:
Gene Tree for ENSG00000270720 (if available)
TreeFam:
Gene Tree for ENSG00000270720 (if available)

No data available for Orthologs for ENSG00000270720 Gene

Paralogs for ENSG00000270720 Gene

No data available for Paralogs for ENSG00000270720 Gene

Variants for ENSG00000270720 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000270720 Gene

Disorders for ENSG00000270720 Gene

Additional Disease Information for ENSG00000270720

No disorders were found for ENSG00000270720 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000270720 Gene

Publications for ENSG00000270720 Gene

No publications were found for ENSG00000270720 Gene.

No data available for Mastermind for ENSG00000270720 Gene

Products for ENSG00000270720 Gene

Sources for ENSG00000270720 Gene