Aliases for ENSG00000270589 Gene

Subcategory (RNA class) for ENSG00000270589 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for ENSG00000270589 Gene

  • Novel Transcript, Antisense To BBIP1 5
  • NONHSAG006870.2 91
  • Lnc-SHOC2-3 165
  • AL158163.1 5

External Ids for ENSG00000270589 Gene

Previous GeneCards Identifiers for ENSG00000270589 Gene

  • GC10P112671

Summaries for ENSG00000270589 Gene

GeneCards Summary for ENSG00000270589 Gene

ENSG00000270589 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000270589 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000270589 Gene

Genomics for ENSG00000270589 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000270589 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J110910 Enhancer 0.3 Ensembl 600.7 -0.3 -295 0.2 ZNF18 ENSG00000270589 piR-56497-017 ADD3 BBIP1 lnc-SMNDC1-8 PDCD4
GH10J110909 Enhancer 0.2 FANTOM5 600.7 -1.3 -1305 0.4 ENSG00000270589 ENSG00000278601 piR-56497-017 SHOC2 PDCD4 BBIP1 lnc-SMNDC1-8
GH10J110566 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas 9.8 -342.3 -342332 4.5 BRCA1 SP1 GATAD2A ATF7 TEAD4 PRDM10 TFE3 SOX13 IKZF1 NFKBIZ SMC3 LOC105378483 SMNDC1 XPNPEP1 ENSG00000270589 RBM20 SNODB1234
GH10J109911 Promoter/Enhancer 1.3 Ensembl ENCODE dbSUPER 13.1 -995.7 -995691 5.9 CREB1 ATF7 BACH1 STAT3 PRDM1 RELA TCF12 IKZF2 RCOR1 SP1 XPNPEP1 ENSG00000270589 ADD3 SMNDC1 lnc-SMNDC1-10
GH10J110065 Promoter/Enhancer 1.4 Ensembl ENCODE dbSUPER 10.3 -841.6 -841602 6 SP1 ZNF629 RFX1 IKZF1 PRDM1 MTA2 PKNOX1 MTA1 PATZ1 ZNF501 SMC3 XPNPEP1 ADD3 ENSG00000270589 RF00017-800 NONHSAG006846.2 SNRPGP12 lnc-SMNDC1-4 MXI1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000270589 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000270589 Gene

Genomic Locations for ENSG00000270589 Gene
chr10:110,910,596-110,912,252
(GRCh38/hg38)
Size:
1,657 bases
Orientation:
Plus strand
chr10:112,670,354-112,672,002
(GRCh37/hg19)
Size:
1,649 bases
Orientation:
Plus strand

Genomic View for ENSG00000270589 Gene

Genes around ENSG00000270589 on UCSC Golden Path with GeneCards custom track
ENSG00000270589 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000270589 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000270589 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000270589 Gene

Proteins for ENSG00000270589 Gene

Post-translational modifications for ENSG00000270589 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000270589 Gene

Domains & Families for ENSG00000270589 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000270589 Gene

Function for ENSG00000270589 Gene

Phenotypes From GWAS Catalog for ENSG00000270589 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000270589 Gene

Localization for ENSG00000270589 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000270589 Gene

Pathways & Interactions for ENSG00000270589 Gene

PathCards logo

SuperPathways for ENSG00000270589 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000270589 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000270589 Gene

Drugs & Compounds for ENSG00000270589 Gene

No Compound Related Data Available

Transcripts for ENSG00000270589 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000270589 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000101A51_9606 lncRNA 1649 2

Ensembl: ENST00000603915 (view in UCSC) ,

LNCipedia: lnc-SHOC2-3:1,

URS00008BDD60_9606 lncRNA 1655 2

LNCipedia: lnc-SHOC2-3:2,

NONCODE: NONHSAT016372.2,

ENSG00000270589 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000270589 Gene

No ASD Table

Relevant External Links for ENSG00000270589 Gene

GeneLoc Exon Structure for
ENSG00000270589

No data available for mRNA/cDNA for ENSG00000270589 Gene

Expression for ENSG00000270589 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000270589 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000270589 Gene

This gene is overexpressed in Brain - Cerebellar Hemisphere (x4.2).
genes like me logo Genes that share expression patterns with ENSG00000270589: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000270589 Gene

Orthologs for ENSG00000270589 Gene

Evolution for ENSG00000270589 Gene

ENSEMBL:
Gene Tree for ENSG00000270589 (if available)
TreeFam:
Gene Tree for ENSG00000270589 (if available)

No data available for Orthologs for ENSG00000270589 Gene

Paralogs for ENSG00000270589 Gene

No data available for Paralogs for ENSG00000270589 Gene

Variants for ENSG00000270589 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000270589 Gene

Disorders for ENSG00000270589 Gene

No disorders were found for ENSG00000270589 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000270589 Gene

Publications for ENSG00000270589 Gene

No publications were found for ENSG00000270589 Gene.

No data available for Mastermind for ENSG00000270589 Gene

Products for ENSG00000270589 Gene

Sources for ENSG00000270589 Gene