Aliases for ENSG00000270240 Gene

Subcategory (RNA class) for ENSG00000270240 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000270240 Gene

  • Novel Transcript, Antisense To CCL5 5
  • NONHSAG021572.2 91
  • HSALNG0115984 164
  • Lnc-TAF15-1 165
  • AC015849.1 5

External Ids for ENSG00000270240 Gene

Additional External Ids for ENSG00000270240 Gene

Summaries for ENSG00000270240 Gene

GeneCards Summary for ENSG00000270240 Gene

ENSG00000270240 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000270240 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000270240 Gene

Genomics for ENSG00000270240 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000270240 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J035869 Promoter 0.3 EPDnew 600.7 -0.1 -70 0.1 ENSG00000270240 HEATR9 LOC105371744 lnc-CCL5-1 piR-40176-014 MMP28
GH17J035878 Promoter/Enhancer 1.6 EPDnew Ensembl ENCODE dbSUPER 0.4 +10.9 10888 3.3 SP1 POLR2A BACH1 JUND ZNF143 RELA PKNOX1 SMAD5 IKZF2 TRIM22 CCL5 C17orf50 TAF15 GAS2L2 HEATR9 LOC105371744 ENSG00000270240
GH17J035871 Enhancer 0.6 Ensembl ENCODE dbSUPER 0.7 +2.6 2648 0.8 SPI1 HEATR9 ENSG00000270240 LOC105371744 CCL5
GH17J035875 Enhancer 0.9 ENCODE dbSUPER 0.4 +7.4 7388 2.2 PRDM1 RXRB ZNF24 IKZF2 GABPA TCF7 DPF2 NR2F2 FOXP1 NBN TAF15 ENSG00000267744 CCL14 HEATR9 CCL5 ENSG00000270240 LOC105371744
GH17J035877 Enhancer 0.5 ENCODE dbSUPER 0.4 +9.0 8976 0.1 NR2C1 NR2F1 CCL5 ENSG00000270240 LOC105371744 HEATR9
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000270240 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000270240 Gene

Genomic Locations for ENSG00000270240 Gene
chr17:35,868,953-35,885,915
(GRCh38/hg38)
Size:
16,963 bases
Orientation:
Plus strand

Genomic View for ENSG00000270240 Gene

Genes around ENSG00000270240 on UCSC Golden Path with GeneCards custom track
ENSG00000270240 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000270240 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000270240 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000270240 Gene

Proteins for ENSG00000270240 Gene

Post-translational modifications for ENSG00000270240 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000270240 Gene

Domains & Families for ENSG00000270240 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000270240 Gene

Function for ENSG00000270240 Gene

Phenotypes From GWAS Catalog for ENSG00000270240 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000270240 Gene

Localization for ENSG00000270240 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000270240 Gene

Pathways & Interactions for ENSG00000270240 Gene

PathCards logo

SuperPathways for ENSG00000270240 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000270240 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000270240 Gene

Drugs & Compounds for ENSG00000270240 Gene

No Compound Related Data Available

Transcripts for ENSG00000270240 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000270240 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00002B8103_9606 lncRNA 662 4

Ensembl: ENST00000605548 (view in UCSC) , ENST00000633084 (view in UCSC) ,

LncBook: HSALNT0239822, HSALNT0239823,

LNCipedia: lnc-TAF15-1:1,

NONCODE: NONHSAT053129.2,

URS00007854F9_9606 lncRNA 297 2

Ensembl: ENST00000615709 (view in UCSC) , ENST00000632224 (view in UCSC) ,

LNCipedia: lnc-TAF15-1:4,

URS00008B3E38_9606 lncRNA 787 3

LncBook: HSALNT0239825,

LNCipedia: lnc-TAF15-1:2,

NONCODE: NONHSAT053130.2,

URS00008BCC46_9606 lncRNA 320 3

LncBook: HSALNT0239826,

LNCipedia: lnc-TAF15-1:3,

NONCODE: NONHSAT053131.2,

URS00009BAF19_9606 lncRNA 662 2

LncBook: HSALNT0239824,

NONCODE: NONHSAT175128.1,

ENSG00000270240 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000270240 Gene

No ASD Table

Relevant External Links for ENSG00000270240 Gene

GeneLoc Exon Structure for
ENSG00000270240

No data available for mRNA/cDNA for ENSG00000270240 Gene

Expression for ENSG00000270240 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000270240 Gene

Orthologs for ENSG00000270240 Gene

Evolution for ENSG00000270240 Gene

ENSEMBL:
Gene Tree for ENSG00000270240 (if available)
TreeFam:
Gene Tree for ENSG00000270240 (if available)

No data available for Orthologs for ENSG00000270240 Gene

Paralogs for ENSG00000270240 Gene

No data available for Paralogs for ENSG00000270240 Gene

Variants for ENSG00000270240 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000270240 Gene

Disorders for ENSG00000270240 Gene

Additional Disease Information for ENSG00000270240

No disorders were found for ENSG00000270240 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000270240 Gene

Publications for ENSG00000270240 Gene

No publications were found for ENSG00000270240 Gene.

No data available for Mastermind for ENSG00000270240 Gene

Products for ENSG00000270240 Gene

Sources for ENSG00000270240 Gene