Aliases for ENSG00000270171 Gene

Subcategory (RNA class) for ENSG00000270171 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for ENSG00000270171 Gene

  • Novel Transcript 5
  • NONHSAG000267 92
  • HSALNG0000570 167
  • AL359881.3 5
  • Lnc-UTS2-8 168

External Ids for ENSG00000270171 Gene

Previous GeneCards Identifiers for ENSG00000270171 Gene

  • GC01M007755

Summaries for ENSG00000270171 Gene

GeneCards Summary for ENSG00000270171 Gene

ENSG00000270171 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000270171 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000270171 Gene

Genomics for ENSG00000270171 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000270171 Gene

Promoters and enhancers for ENSG00000270171 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J007694 Enhancer 0.2 Ensembl 500.7 -0.5 -457 0.2 ENSG00000270171 VAMP3 PER3 ENSG00000270035 CAMTA1
GH01J007678 Promoter/Enhancer 1.4 ENCODE CraniofacialAtlas 13.6 +14.9 14896 2.8 HNRNPK NRF1 POLR2G NCOR1 PHF8 KDM6A ZNF623 ZBTB26 TGIF2 ZBTB7A ENSG00000270171 VAMP3 PER3 CAMTA1 FJ601684-002
GH01J007703 Promoter/Enhancer 1.5 FANTOM5 ENCODE CraniofacialAtlas 11.4 -10.0 -10042 2.3 HNRNPK POLR2G JUND ZBTB26 TARDBP KLF7 CTBP1 ZBTB7A GATAD2B HDAC2 LOC105376689 lnc-UTS2-5 PER3 ENSG00000270171 VAMP3 SLC45A1 ENSG00000236266 TNFRSF9 CAMTA1
GH01J007688 Enhancer 0.8 ENCODE 14.2 +5.9 5887 0.9 NCOR1 TEAD1 ZSCAN9 CEBPB SAP130 CREM FOXP1 SMAD4 ZGPAT BCL6 ENSG00000270171 FJ601684-002 CAMTA1
GH01J007770 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 5.4 -76.6 -76643 2.6 HNRNPK EP300 POLR2G SP1 PHF8 ZFX ZBTB5 POLR2A ZBTB11 ZBTB26 VAMP3 NONHSAG000272.2 ENSG00000269925 UTS2 ENSG00000270171 PARK7
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000270171 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000270171 Gene

Genomic Locations for ENSG00000270171 Gene
chr1:7,693,124-7,694,844
(GRCh38/hg38)
Size:
1,721 bases
Orientation:
Minus strand
chr1:7,753,184-7,754,904
(GRCh37/hg19)
Size:
1,721 bases
Orientation:
Minus strand

Genomic View for ENSG00000270171 Gene

Genes around ENSG00000270171 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000270171 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000270171 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000270171 Gene

Proteins for ENSG00000270171 Gene

Post-translational modifications for ENSG00000270171 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000270171 Gene

Domains & Families for ENSG00000270171 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000270171 Gene

Function for ENSG00000270171 Gene

Phenotypes From GWAS Catalog for ENSG00000270171 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000270171 Gene

Localization for ENSG00000270171 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000270171 Gene

Pathways & Interactions for ENSG00000270171 Gene

PathCards logo

SuperPathways for ENSG00000270171 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ENSG00000270171 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000270171 Gene

Drugs & Compounds for ENSG00000270171 Gene

No Compound Related Data Available

Transcripts for ENSG00000270171 Gene

mRNA/cDNA for ENSG00000270171 Gene

2 RNACentral transcripts :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
2 NONCODE transcripts :
1 LncBook transcripts :
2 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000270171 Gene

No ASD Table

Relevant External Links for ENSG00000270171 Gene

GeneLoc Exon Structure for
ENSG00000270171

Expression for ENSG00000270171 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000270171 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000270171 Gene

This gene is overexpressed in Brain - Cerebellum (x13.1) and Brain - Cerebellar Hemisphere (x12.4).
genes like me logo Genes that share expression patterns with ENSG00000270171: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000270171 Gene

Orthologs for ENSG00000270171 Gene

Evolution for ENSG00000270171 Gene

ENSEMBL:
Gene Tree for ENSG00000270171 (if available)
TreeFam:
Gene Tree for ENSG00000270171 (if available)

No data available for Orthologs for ENSG00000270171 Gene

Paralogs for ENSG00000270171 Gene

No data available for Paralogs for ENSG00000270171 Gene

Variants for ENSG00000270171 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000270171 Gene

Disorders for ENSG00000270171 Gene

No disorders were found for ENSG00000270171 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000270171 Gene

Publications for ENSG00000270171 Gene

No publications were found for ENSG00000270171 Gene.

No data available for Mastermind for ENSG00000270171 Gene

Products for ENSG00000270171 Gene

Sources for ENSG00000270171 Gene