Aliases for ENSG00000270116 Gene

Subcategory (RNA class) for ENSG00000270116 Gene

lncRNA

Number of RNA Genes sources:

2 / 14

Aliases for ENSG00000270116 Gene

  • Novel Transcript, Sense Intronic To TTC3 5
  • Lnc-RIPPLY3-5 168
  • NONHSAG032801 92
  • AP001429.1 5

External Ids for ENSG00000270116 Gene

Previous GeneCards Identifiers for ENSG00000270116 Gene

  • GC21P038473

Summaries for ENSG00000270116 Gene

GeneCards Summary for ENSG00000270116 Gene

ENSG00000270116 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000270116 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000270116 Gene

Genomics for ENSG00000270116 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000270116 Gene

Promoters and enhancers for ENSG00000270116 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21J037102 Enhancer 0.5 Ensembl 500.7 +1.8 1787 0.8 SUPT5H CEBPB TEAD3 CEBPG GATAD2A ZNF394 CEBPA ENSG00000270116 TTC3 PIGP MRPL20P1 HLCS ENSG00000207416 piR-43107-194 L13712-021
GH21J036209 Enhancer 1.1 Ensembl ENCODE 10.5 -889.4 -889410 4.1 ZNF217 CTCF JUND FOS ZNF639 ZIC2 ZNF623 REST RAD21 EP300 TTC3 RIMKLBP1 DOP1B MORC3 ENSG00000270116 LINC01436 CBR1 lnc-SETD4-8 piR-61945-321 CBR3-AS1
GH21J037086 Enhancer 0.9 ENCODE 0.4 -13.5 -13549 0.9 CTCF ZSCAN5C FOS ZNF639 REST TOE1 CTBP1 SMC3 MIER1 TRIM25 TTC3 MORC3 ENSG00000242553 MRPL20P1 HLCS ENSG00000207416 DYRK1A VPS26C ENSG00000270116
GH21J037104 Enhancer 0.3 Ensembl 0.7 +4.0 3987 0.4 ZBTB33 POLR2A piR-43107-194 PIGP TTC3 HLCS MRPL20P1 ENSG00000207416 ENSG00000270116 L13712-021
GH21J037076 Promoter 0.4 EPDnew 0.4 -24.1 -24111 0.1 ZNF362 TTC3 ENSG00000270116 lnc-TTC3-4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000270116 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000270116 Gene

Genomic Locations for ENSG00000270116 Gene
chr21:37,100,814-37,101,343
(GRCh38/hg38)
Size:
530 bases
Orientation:
Plus strand
chr21:38,473,114-38,473,643
(GRCh37/hg19)
Size:
530 bases
Orientation:
Plus strand

Genomic View for ENSG00000270116 Gene

Genes around ENSG00000270116 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000270116 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000270116 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000270116 Gene

Proteins for ENSG00000270116 Gene

Post-translational modifications for ENSG00000270116 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000270116 Gene

Domains & Families for ENSG00000270116 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000270116 Gene

Function for ENSG00000270116 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000270116 Gene

Localization for ENSG00000270116 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000270116 Gene

Pathways & Interactions for ENSG00000270116 Gene

PathCards logo

SuperPathways for ENSG00000270116 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ENSG00000270116 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000270116 Gene

Drugs & Compounds for ENSG00000270116 Gene

No Compound Related Data Available

Transcripts for ENSG00000270116 Gene

mRNA/cDNA for ENSG00000270116 Gene

1 RNACentral transcripts :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 NONCODE transcripts :
1 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000270116 Gene

No ASD Table

Relevant External Links for ENSG00000270116 Gene

GeneLoc Exon Structure for
ENSG00000270116

Expression for ENSG00000270116 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000270116 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000270116 Gene

This gene is overexpressed in Ovary (x4.0).
genes like me logo Genes that share expression patterns with ENSG00000270116: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000270116 Gene

Orthologs for ENSG00000270116 Gene

Evolution for ENSG00000270116 Gene

ENSEMBL:
Gene Tree for ENSG00000270116 (if available)
TreeFam:
Gene Tree for ENSG00000270116 (if available)

No data available for Orthologs for ENSG00000270116 Gene

Paralogs for ENSG00000270116 Gene

No data available for Paralogs for ENSG00000270116 Gene

Variants for ENSG00000270116 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000270116 Gene

Disorders for ENSG00000270116 Gene

No disorders were found for ENSG00000270116 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000270116 Gene

Publications for ENSG00000270116 Gene

No publications were found for ENSG00000270116 Gene.

No data available for Mastermind for ENSG00000270116 Gene

Products for ENSG00000270116 Gene

Sources for ENSG00000270116 Gene