ENSG00000270066 Gene (RNA Gene)

 

GC01P109107
GIFtS:
6
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Aliases for ENSG00000270066 Gene

Subcategory (RNA class) for ENSG00000270066 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for ENSG00000270066 Gene

  • Small Cajal Body-Specific RNA 2 5
  • NONHSAG002325.2 91
  • Lnc-TMEM167B-1 165
  • AL356488.2 5

External Ids for ENSG00000270066 Gene

Previous GeneCards Identifiers for ENSG00000270066 Gene

  • GC01P109103
  • GC01P109115
  • GC01P109117
  • GC01P109112
  • GC01P109109

Summaries for ENSG00000270066 Gene

GeneCards Summary for ENSG00000270066 Gene

ENSG00000270066 is an RNA Gene, and is affiliated with the lncRNA class.

Rfam classification for ENSG00000270066 Gene

  • Small Cajal body-specific RNA 2

Additional gene information for ENSG00000270066 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for ENSG00000270066 Gene

Genomics for ENSG00000270066 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for ENSG00000270066 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH01J109099 Promoter/Enhancer 1.9 Ensembl ENCODE CraniofacialAtlas dbSUPER 600.7 +0.5 508 2.6 ZNF221 ARHGAP35 SP1 HNRNPL CREB1 GATAD2A CTCF ZNF629 PRDM10 REST ENSG00000270066 SCARNA2 ENSG00000258634 PRPF38B ENSG00000244716 C1orf194 ENSG00000228665 STRIP1 SLC25A24 GSTM2
GH01J109098 Enhancer 0.2 Ensembl 600.7 -1.4 -1392 0.4 ENSG00000270066 SCARNA2 C1orf194 NDUFB3P1 TMEM167B ELAPOR1
GH01J108947 Promoter/Enhancer 0.8 EPDnew ENCODE 4.5 -151.7 -151711 1.6 ZNF341 ZFHX2 NANOG EGR2 POU5F1 CLCC1 TMEM167B ENSG00000270066 lnc-WDR47-1 AKNAD1 GPSM2
GH01J108956 Enhancer 0.7 Ensembl ENCODE 4.3 -143.0 -142992 2.8 RFX1 IKZF1 HDGF NFIC ZNF384 DPF2 HNF4A VEZF1 ZBTB33 KLF1 CLCC1 ATXN7L2 ENSG00000270066 AKNAD1 lnc-WDR47-1 GPSM2
GH01J109095 Enhancer 0.8 Ensembl ENCODE 0.7 -4.1 -4055 1.5 PRDM10 FOXA1 REST SOX6 SCRT2 ZNF766 ESR1 CTBP1 ZNF444 ZNF316 C1orf194 ENSG00000270066 NDUFB3P1 SCARNA2 NONHSAG002324.2 TMEM167B ELAPOR1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000270066 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000270066 Gene

Genomic Locations for ENSG00000270066 Gene
chr1:109,100,193-109,100,619
(GRCh38/hg38)
Size:
427 bases
Orientation:
Plus strand

Genomic View for ENSG00000270066 Gene

Genes around ENSG00000270066 on UCSC Golden Path with GeneCards custom track
ENSG00000270066 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000270066 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000270066 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

No data available for RefSeq DNA sequence for ENSG00000270066 Gene

Proteins for ENSG00000270066 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for ENSG00000270066 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000270066 Gene

Domains & Families for ENSG00000270066 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000270066 Gene

Function for ENSG00000270066 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for ENSG00000270066 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000270066 Gene

Localization for ENSG00000270066 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000270066 Gene

Pathways & Interactions for ENSG00000270066 Gene

PathCards logo

SuperPathways for ENSG00000270066 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000270066 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000270066 Gene

Drugs & Compounds for ENSG00000270066 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for ENSG00000270066 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000270066 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000040AD32_9606 lncRNA 427 2

Ensembl: ENST00000602755 (view in UCSC) ,

LNCipedia: lnc-TMEM167B-1:2,

URS00008B3922_9606 lncRNA 3916 2

LNCipedia: lnc-TMEM167B-1:1,

NONCODE: NONHSAT005013.2,

URS0000D576B2_9606 lncRNA 421 1

LNCipedia: lnc-TMEM167B-1:5,

URS0000D5CBEB_9606 lncRNA 414 1

LNCipedia: lnc-TMEM167B-1:4,

ENSG00000270066 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000270066 Gene

No ASD Table

Relevant External Links for ENSG00000270066 Gene

GeneLoc Exon Structure for
ENSG00000270066

No data available for mRNA/cDNA for ENSG00000270066 Gene

Expression for ENSG00000270066 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000270066 Gene

Orthologs for ENSG00000270066 Gene

This gene was present in the common ancestor of chordates.

Orthologs for ENSG00000270066 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
 Mammalia SCARNA2 31
  • 99 (a)
 OneToOne
Cow
(Bos Taurus)
 Mammalia SCARNA2 31
  • 79 (a)
 OneToOne
Mouse
(Mus musculus)
 Mammalia Scarna2 31
  • 78 (a)
 OneToOne
Dog
(Canis familiaris)
 Mammalia SCARNA2 31
  • 78 (a)
 OneToOne
Oppossum
(Monodelphis domestica)
 Mammalia SCARNA2 31
  • 66 (a)
 OneToOne
Platypus
(Ornithorhynchus anatinus)
 Mammalia SCARNA2 31
  • 62 (a)
 OneToOne
Lizard
(Anolis carolinensis)
 Reptilia SCARNA2 31
  • 62 (a)
 OneToOne
Species where no ortholog for ENSG00000270066 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for ENSG00000270066 Gene

ENSEMBL:
Gene Tree for ENSG00000270066 (if available)
TreeFam:
Gene Tree for ENSG00000270066 (if available)

Paralogs for ENSG00000270066 Gene

No data available for Paralogs for ENSG00000270066 Gene

Variants for ENSG00000270066 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000270066 Gene

Disorders for ENSG00000270066 Gene

No disorders were found for ENSG00000270066 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000270066 Gene

Publications for ENSG00000270066 Gene

No publications were found for ENSG00000270066 Gene.

No data available for Mastermind for ENSG00000270066 Gene

Products for ENSG00000270066 Gene

Sources for ENSG00000270066 Gene