Free for academic non-profit institutions. Other users need a Commercial license

Aliases for ENSG00000270066 Gene

Subcategory (RNA class) for ENSG00000270066 Gene

scaRNA

Quality Score for this RNA gene is

13

Aliases for ENSG00000270066 Gene

  • Small Cajal Body-Specific RNA 2 5
  • AL356488.2 5

External Ids for ENSG00000270066 Gene

ORGUL Members for ENSG00000270066 Gene

Previous GeneCards Identifiers for ENSG00000270066 Gene

  • GC01P109103
  • GC01P109115
  • GC01P109107
  • GC01P109109
  • GC01P109112

Summaries for ENSG00000270066 Gene

GeneCards Summary for ENSG00000270066 Gene

ENSG00000270066 is an RNA Gene, and is affiliated with the scaRNA class.

Additional gene information for ENSG00000270066 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ENSG00000270066 Gene

Genomics for ENSG00000270066 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000270066 Gene

Promoters and enhancers for ENSG00000270066 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J109099 Promoter/Enhancer 1.8 Ensembl ENCODE dbSUPER 600.7 +0.7 657 2.7 MTA3 ZNF652 SP1 CC2D1A ZFX CTCF ELF3 MNT ZNF148 NKRF ENSG00000270066 GC01P109104 GC01P109118 SCARNA2 ENSG00000258634 PRPF38B STRIP1 ENSG00000244716 ENSG00000228665 C1orf194
GH01J108956 Promoter/Enhancer 1.1 Ensembl ENCODE 4.3 -143.2 -143207 0.8 IKZF1 RFX1 HDGF NFIC DPF2 VEZF1 ZBTB33 KLF1 ENSG00000270066 GC01P108959 ENSG00000274068 CLCC1 GC01M108841 GPSM2
GH01J108947 Promoter/Enhancer 1 EPDnew ENCODE 4.5 -151.7 -151711 1.6 ZNF341 ZFHX2 NANOG POU5F1 EGR2 CLCC1 TMEM167B ENSG00000270066 GC01P108959 ENSG00000274068 GPSM2 GC01M108841
GH01J108954 Enhancer 0.2 Ensembl 5.9 -145.5 -145492 0.6 ENSG00000270066 TAF13 GC01P108959 ENSG00000274068 CLCC1 GC01M108841 GPSM2
GH01J109104 Promoter/Enhancer 0.8 Ensembl dbSUPER 0.7 +4.2 4208 0.4 POLR2A ENSG00000251484 LOC100420092 ENSG00000270066 SCARNA2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000270066 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000270066 Gene

Genomic Locations for ENSG00000270066 Gene
chr1:109,100,193-109,100,619
(GRCh38/hg38)
Size:
427 bases
Orientation:
Plus strand

Genomic View for ENSG00000270066 Gene

Genes around ENSG00000270066 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000270066 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000270066 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000270066 Gene

Proteins for ENSG00000270066 Gene

Post-translational modifications for ENSG00000270066 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000270066 Gene

Domains & Families for ENSG00000270066 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ENSG00000270066 Gene

Function for ENSG00000270066 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000270066 Gene

Localization for ENSG00000270066 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000270066 Gene

Pathways & Interactions for ENSG00000270066 Gene

PathCards logo

SuperPathways for ENSG00000270066 Gene

No Data Available

Interacting Proteins for ENSG00000270066 Gene

Gene Ontology (GO) - Biological Process for ENSG00000270066 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ENSG00000270066 Gene

Drugs & Compounds for ENSG00000270066 Gene

No Compound Related Data Available

Transcripts for ENSG00000270066 Gene

mRNA/cDNA for ENSG00000270066 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000270066 Gene

No ASD Table

Relevant External Links for ENSG00000270066 Gene

GeneLoc Exon Structure for
ENSG00000270066

Expression for ENSG00000270066 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000270066 Gene

Orthologs for ENSG00000270066 Gene

This gene was present in the common ancestor of chordates.

Orthologs for ENSG00000270066 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SCARNA2 35
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SCARNA2 35
  • 79 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Scarna2 35
  • 78 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SCARNA2 35
  • 78 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SCARNA2 35
  • 66 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SCARNA2 35
  • 62 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SCARNA2 35
  • 62 (a)
OneToOne
Species where no ortholog for ENSG00000270066 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ENSG00000270066 Gene

ENSEMBL:
Gene Tree for ENSG00000270066 (if available)
TreeFam:
Gene Tree for ENSG00000270066 (if available)

Paralogs for ENSG00000270066 Gene

No data available for Paralogs for ENSG00000270066 Gene

Variants for ENSG00000270066 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000270066 Gene

Disorders for ENSG00000270066 Gene

No disorders were found for ENSG00000270066 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000270066 Gene

Publications for ENSG00000270066 Gene

No publications were found for ENSG00000270066 Gene.

No data available for External Links for ENSG00000270066 Gene

Products for ENSG00000270066 Gene

Sources for ENSG00000270066 Gene

Content
Loading form....