Aliases for ENSG00000269935 Gene

Subcategory (RNA class) for ENSG00000269935 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for ENSG00000269935 Gene

  • Novel Transcript, Antisense To JPH3 5
  • NONHSAG020255.2 91
  • Lnc-KLHDC4-74 165
  • AC092720.2 5

External Ids for ENSG00000269935 Gene

Summaries for ENSG00000269935 Gene

GeneCards Summary for ENSG00000269935 Gene

ENSG00000269935 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000269935 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000269935 Gene

Genomics for ENSG00000269935 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000269935 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J087601 Promoter/Enhancer 1.4 EPDnew Ensembl ENCODE 600.7 -0.5 -511 2.6 ZNF629 ZNF692 ZIC2 POLR2A PATZ1 EZH2 SCRT2 ZBTB20 SP2 ZBTB26 5MWI_A-064 ENSG00000269935 JPH3 KLHDC4
GH16J087604 Enhancer 0.5 ENCODE 600.7 -1.9 -1910 0 PATZ1 ZBTB17 POLR2A ZNF335 SIN3A SMARCA4 EZH2 PRDM2 GLIS2 5MWI_A-064 ENSG00000269935 JPH3 KLHDC4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000269935 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000269935 Gene

Genomic Locations for ENSG00000269935 Gene
chr16:87,600,428-87,602,190
(GRCh38/hg38)
Size:
1,763 bases
Orientation:
Minus strand
chr16:87,634,132-87,635,796
(GRCh37/hg19)
Size:
1,665 bases
Orientation:
Minus strand

Genomic View for ENSG00000269935 Gene

Genes around ENSG00000269935 on UCSC Golden Path with GeneCards custom track
ENSG00000269935 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000269935 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000269935 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000269935 Gene

Proteins for ENSG00000269935 Gene

Post-translational modifications for ENSG00000269935 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000269935 Gene

Domains & Families for ENSG00000269935 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000269935 Gene

Function for ENSG00000269935 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000269935 Gene

Localization for ENSG00000269935 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000269935 Gene

Pathways & Interactions for ENSG00000269935 Gene

PathCards logo

SuperPathways for ENSG00000269935 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000269935 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000269935 Gene

Drugs & Compounds for ENSG00000269935 Gene

No Compound Related Data Available

Transcripts for ENSG00000269935 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000269935 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00005B8992_9606 lncRNA 1665 3

Ensembl: ENST00000602388 (view in UCSC) ,

LNCipedia: lnc-KLHDC4-74:1,

NONCODE: NONHSAT144309.2,

URS00008B41C1_9606 lncRNA 1660 2

LNCipedia: lnc-KLHDC4-74:2,

NONCODE: NONHSAT144310.2,

URS0000D5D39A_9606 lncRNA 1658 1

LNCipedia: lnc-KLHDC4-74:3,

URS0000D571F6_9606 lncRNA 826 1

LNCipedia: lnc-KLHDC4-74:4,

ENSG00000269935 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000269935 Gene

No ASD Table

Relevant External Links for ENSG00000269935 Gene

GeneLoc Exon Structure for
ENSG00000269935

No data available for mRNA/cDNA for ENSG00000269935 Gene

Expression for ENSG00000269935 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000269935 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000269935 Gene

This gene is overexpressed in Brain - Amygdala (x7.0), Brain - Nucleus accumbens (basal ganglia) (x6.3), Brain - Putamen (basal ganglia) (x5.0), Brain - Caudate (basal ganglia) (x4.8), Brain - Cerebellum (x4.7), Brain - Hippocampus (x4.6), Brain - Cerebellar Hemisphere (x4.3), and Brain - Cortex (x4.2).
genes like me logo Genes that share expression patterns with ENSG00000269935: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000269935 Gene

Orthologs for ENSG00000269935 Gene

Evolution for ENSG00000269935 Gene

ENSEMBL:
Gene Tree for ENSG00000269935 (if available)
TreeFam:
Gene Tree for ENSG00000269935 (if available)

No data available for Orthologs for ENSG00000269935 Gene

Paralogs for ENSG00000269935 Gene

No data available for Paralogs for ENSG00000269935 Gene

Variants for ENSG00000269935 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000269935 Gene

Disorders for ENSG00000269935 Gene

Additional Disease Information for ENSG00000269935

No disorders were found for ENSG00000269935 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000269935 Gene

Publications for ENSG00000269935 Gene

No publications were found for ENSG00000269935 Gene.

No data available for Mastermind for ENSG00000269935 Gene

Products for ENSG00000269935 Gene

Sources for ENSG00000269935 Gene