Free for academic non-profit institutions. Other users need a Commercial license

Aliases for ENSG00000269925 Gene

Subcategory (RNA class) for ENSG00000269925 Gene

lncRNA

Quality Score for this RNA gene is

13

Aliases for ENSG00000269925 Gene

  • Novel Transcript, Sense Intronic To VAMP3 5
  • Z98884.2 5

External Ids for ENSG00000269925 Gene

ORGUL Members for ENSG00000269925 Gene

Summaries for ENSG00000269925 Gene

GeneCards Summary for ENSG00000269925 Gene

ENSG00000269925 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000269925 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ENSG00000269925 Gene

Genomics for ENSG00000269925 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000269925 Gene

Promoters and enhancers for ENSG00000269925 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J007775 Enhancer 0.2 Ensembl 611.4 -0.7 -682 0.2 ENSG00000269925 PARK7 VAMP3
GH01J007953 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 10.4 +178.0 177954 1.9 SP1 CC2D1A ZFX MNT NKRF POLR2A MLLT1 GTF2F1 ZNF687 NCOA6 PARK7 GC01M007954 GC01P007952 GC01P007955 RERE ENSG00000269925 LOC100129776 GC01P007941
GH01J007770 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 6.9 -5.0 -4982 2.8 SP1 CC2D1A ZFX MNT NKRF MLLT1 CEBPG GTF2F1 ZNF687 AHR VAMP3 ENSG00000269925 UTS2 ENSG00000270171 PARK7
GH01J007826 Promoter/Enhancer 1.4 Ensembl ENCODE 4.9 +51.0 51017 2 CC2D1A ZFX GTF2F1 CSDE1 TRIM24 EGR1 ZNF639 SMARCA4 MTA1 GMEB1 ENSG00000236266 VAMP3 UTS2 PER3 TNFRSF9 ENSG00000270035 ENSG00000269925 ENSG00000270171
GH01J007729 Enhancer 0.7 Ensembl ENCODE 8.8 -48.2 -48183 4 SP1 ZNF623 NR2F2 CEBPB VAMP3 PER3 UTS2 ENSG00000269925 ENSG00000270171 LOC105376689 CAMTA1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000269925 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000269925 Gene

Genomic Locations for ENSG00000269925 Gene
chr1:7,776,383-7,776,775
(GRCh38/hg38)
Size:
393 bases
Orientation:
Plus strand
chr1:7,836,443-7,836,835
(GRCh37/hg19)
Size:
393 bases
Orientation:
Plus strand

Genomic View for ENSG00000269925 Gene

Genes around ENSG00000269925 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000269925 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000269925 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000269925 Gene

Proteins for ENSG00000269925 Gene

Post-translational modifications for ENSG00000269925 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000269925 Gene

Domains & Families for ENSG00000269925 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ENSG00000269925 Gene

Function for ENSG00000269925 Gene

Phenotypes From GWAS Catalog for ENSG00000269925 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000269925 Gene

Localization for ENSG00000269925 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000269925 Gene

Pathways & Interactions for ENSG00000269925 Gene

PathCards logo

SuperPathways for ENSG00000269925 Gene

No Data Available

Interacting Proteins for ENSG00000269925 Gene

Gene Ontology (GO) - Biological Process for ENSG00000269925 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ENSG00000269925 Gene

Drugs & Compounds for ENSG00000269925 Gene

No Compound Related Data Available

Transcripts for ENSG00000269925 Gene

mRNA/cDNA for ENSG00000269925 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000269925 Gene

No ASD Table

Relevant External Links for ENSG00000269925 Gene

GeneLoc Exon Structure for
ENSG00000269925

Expression for ENSG00000269925 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ENSG00000269925 Gene

genes like me logo Genes that share expression patterns with ENSG00000269925: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000269925 Gene

Orthologs for ENSG00000269925 Gene

Evolution for ENSG00000269925 Gene

ENSEMBL:
Gene Tree for ENSG00000269925 (if available)
TreeFam:
Gene Tree for ENSG00000269925 (if available)

No data available for Orthologs for ENSG00000269925 Gene

Paralogs for ENSG00000269925 Gene

No data available for Paralogs for ENSG00000269925 Gene

Variants for ENSG00000269925 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000269925 Gene

Disorders for ENSG00000269925 Gene

No disorders were found for ENSG00000269925 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000269925 Gene

Publications for ENSG00000269925 Gene

No publications were found for ENSG00000269925 Gene.

No data available for External Links for ENSG00000269925 Gene

Products for ENSG00000269925 Gene

Sources for ENSG00000269925 Gene

Content
Loading form....