Aliases for ENSG00000269688 Gene

Subcategory (RNA class) for ENSG00000269688 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000269688 Gene

  • Novel Transcript, Sense Intronic To HNRNPL 5
  • NONHSAG025761.2 91
  • HSALNG0125952 164
  • AC008982.2 5
  • Lnc-ECH1-5 165

External Ids for ENSG00000269688 Gene

Additional External Ids for ENSG00000269688 Gene

Previous GeneCards Identifiers for ENSG00000269688 Gene

  • GC19M039336
  • GC19M038845
  • GC19M039021
  • GC19M039160
  • GC19M039714
  • GC19M041437
  • GC19M038847
  • GC19M039011
  • GC19M038961

Summaries for ENSG00000269688 Gene

GeneCards Summary for ENSG00000269688 Gene

ENSG00000269688 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000269688 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000269688 Gene

Genomics for ENSG00000269688 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000269688 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J038844 Enhancer 0.6 ENCODE dbSUPER 600.7 +0.1 106 0.9 POLR2A MNT RBM22 PAF1 ZNF664 POLR2B ENSG00000269688 lnc-ECH1-6 RINL ENSG00000268083 HNRNPL lnc-ECH1-2
GH19J038847 Enhancer 0.5 ENCODE dbSUPER 600.7 -0.8 -797 0.2 POLR2A POLR2B ENSG00000269688 lnc-ECH1-6 LGALS4 ENSG00000268083 HNRNPL lnc-NFKBIB-5
GH19J039397 Promoter/Enhancer 3 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 50.2 -561.6 -561576 20 ZNF221 BRCA1 RNF2 ARHGAP35 CEBPG SP1 HNRNPL CREB1 GATAD2A CTCF PAF1 ZFP36 5EW4_A-029 MG828566 HNRNPL ZNF780B SUPT5H ZNF780A FBL AKT2
GH19J038647 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 43.5 +185.7 185707 25.6 ZNF221 SP1 HNRNPL CREB1 GATAD2A ZBTB33 ATF7 TEAD4 PRDM10 REST ACTN4 HNRNPL ZFP30 ZNF607 ZNF781 ZNF573 SUPT5H ENSG00000267152 PAK4 RN7SL566P
GH19J038336 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 41.9 +509.0 509000 2.6 RNF2 ARHGAP35 SP1 CREB1 GATAD2A CTCF ZBTB33 PRDM10 ZNF629 TFE3 CATSPERG HNRNPL ZNF527 ZNF571 ZFP30 ZNF573 ZNF793 ZNF607 C19orf33 ZNF540
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000269688 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000269688 Gene

Genomic Locations for ENSG00000269688 Gene
chr19:38,844,729-38,845,499
(GRCh38/hg38)
Size:
771 bases
Orientation:
Minus strand
chr19:39,335,369-39,336,139
(GRCh37/hg19)
Size:
771 bases
Orientation:
Minus strand

Genomic View for ENSG00000269688 Gene

Genes around ENSG00000269688 on UCSC Golden Path with GeneCards custom track
ENSG00000269688 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000269688 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000269688 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000269688 Gene

Proteins for ENSG00000269688 Gene

Post-translational modifications for ENSG00000269688 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000269688 Gene

Domains & Families for ENSG00000269688 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000269688 Gene

Function for ENSG00000269688 Gene

Phenotypes From GWAS Catalog for ENSG00000269688 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000269688 Gene

Localization for ENSG00000269688 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000269688 Gene

Pathways & Interactions for ENSG00000269688 Gene

PathCards logo

SuperPathways for ENSG00000269688 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000269688 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000269688 Gene

Drugs & Compounds for ENSG00000269688 Gene

No Compound Related Data Available

Transcripts for ENSG00000269688 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000269688 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00000EE78A_9606 lncRNA 493 4

Ensembl: ENST00000600473 (view in UCSC) , ENST00000634788 (view in UCSC) ,

LncBook: HSALNT0259645,

LNCipedia: lnc-ECH1-5:1,

NONCODE: NONHSAT066250.2,

ENSG00000269688 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000269688 Gene

No ASD Table

Relevant External Links for ENSG00000269688 Gene

GeneLoc Exon Structure for
ENSG00000269688

No data available for mRNA/cDNA for ENSG00000269688 Gene

Expression for ENSG00000269688 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000269688 Gene

genes like me logo Genes that share expression patterns with ENSG00000269688: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000269688 Gene

Orthologs for ENSG00000269688 Gene

Evolution for ENSG00000269688 Gene

ENSEMBL:
Gene Tree for ENSG00000269688 (if available)
TreeFam:
Gene Tree for ENSG00000269688 (if available)

No data available for Orthologs for ENSG00000269688 Gene

Paralogs for ENSG00000269688 Gene

No data available for Paralogs for ENSG00000269688 Gene

Variants for ENSG00000269688 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000269688 Gene

Disorders for ENSG00000269688 Gene

No disorders were found for ENSG00000269688 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000269688 Gene

Publications for ENSG00000269688 Gene

No publications were found for ENSG00000269688 Gene.

No data available for Mastermind for ENSG00000269688 Gene

Products for ENSG00000269688 Gene

Sources for ENSG00000269688 Gene