Aliases for ENSG00000269680 Gene

Subcategory (RNA class) for ENSG00000269680 Gene

lncRNA

Number of RNA Genes sources:

2 / 14

Aliases for ENSG00000269680 Gene

  • Novel Transcript, Antisense To TRIP10 5
  • NONHSAG024622 92
  • Lnc-SH2D3A-2 168
  • AC008760.1 5

External Ids for ENSG00000269680 Gene

Summaries for ENSG00000269680 Gene

GeneCards Summary for ENSG00000269680 Gene

ENSG00000269680 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000269680 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000269680 Gene

Genomics for ENSG00000269680 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000269680 Gene

Promoters and enhancers for ENSG00000269680 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J006751 Promoter/Enhancer 1.7 ENCODE CraniofacialAtlas dbSUPER 500.7 -1.4 -1365 3.3 HNRNPK CTCF SIN3A NRF1 POLR2G USF1 SP1 NCOR1 TEAD4 ZBTB11 ENSG00000269680 SH2D3A piR-56355 lnc-SH2D3A-1 TRIP10
GH19J006750 Enhancer 0.6 ENCODE dbSUPER 500.7 +1.2 1202 0.3 POLR2G ZBTB33 AGO2 RBFOX2 ENSG00000269680 CD70 HSALNG0123591 TRIP10
GH19J006733 Promoter/Enhancer 2.6 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 11.8 +13.9 13866 8.4 FOXK2 ZBTB40 ZNF217 EP300 CTCF SIN3A NRF1 MYC USF1 POLR2G GPR108 TRIP10 HSALNG0123590 MIR6791 lnc-C3-2 KHSRP DUS3L XAB2 ZNF557 GTF2F1
GH19J006527 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 11.4 +220.3 220333 7.1 ZBTB40 EP300 NRF1 ZNF300 USF1 POLR2G SP1 BCLAF1 RBAK GTF2E2 TNFSF9 lnc-TUBB4A-2 SAFB2 ZNF557 KHSRP DUS3L SNRPEP4 ENSG00000267571 VMAC RANBP3
GH19J005902 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas 11.4 +847.1 847066 4.4 EP300 FOXK2 HNRNPK ZBTB40 ZNF217 NRF1 MYC TCF12 POLR2G USF1 ENSG00000267314 ENSG00000267740 NDUFA11 VMAC lnc-NDUFA11-3 CAPS KHSRP DUS3L PTPRS SAFB
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000269680 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000269680 Gene

Genomic Locations for ENSG00000269680 Gene
chr19:6,748,293-6,751,467
(GRCh38/hg38)
Size:
3,175 bases
Orientation:
Minus strand
chr19:6,748,304-6,751,478
(GRCh37/hg19)
Size:
3,175 bases
Orientation:
Minus strand

Genomic View for ENSG00000269680 Gene

Genes around ENSG00000269680 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000269680 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000269680 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000269680 Gene

Proteins for ENSG00000269680 Gene

Post-translational modifications for ENSG00000269680 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000269680 Gene

Domains & Families for ENSG00000269680 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000269680 Gene

Function for ENSG00000269680 Gene

Phenotypes From GWAS Catalog for ENSG00000269680 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000269680 Gene

Localization for ENSG00000269680 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000269680 Gene

Pathways & Interactions for ENSG00000269680 Gene

PathCards logo

SuperPathways for ENSG00000269680 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ENSG00000269680 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000269680 Gene

Drugs & Compounds for ENSG00000269680 Gene

No Compound Related Data Available

Transcripts for ENSG00000269680 Gene

mRNA/cDNA for ENSG00000269680 Gene

1 RNACentral transcripts :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 NONCODE transcripts :
1 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000269680 Gene

No ASD Table

Relevant External Links for ENSG00000269680 Gene

GeneLoc Exon Structure for
ENSG00000269680

Expression for ENSG00000269680 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000269680 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000269680 Gene

This gene is overexpressed in Esophagus - Mucosa (x4.0).
genes like me logo Genes that share expression patterns with ENSG00000269680: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000269680 Gene

Orthologs for ENSG00000269680 Gene

Evolution for ENSG00000269680 Gene

ENSEMBL:
Gene Tree for ENSG00000269680 (if available)
TreeFam:
Gene Tree for ENSG00000269680 (if available)

No data available for Orthologs for ENSG00000269680 Gene

Paralogs for ENSG00000269680 Gene

No data available for Paralogs for ENSG00000269680 Gene

Variants for ENSG00000269680 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000269680 Gene

Disorders for ENSG00000269680 Gene

No disorders were found for ENSG00000269680 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000269680 Gene

Publications for ENSG00000269680 Gene

No publications were found for ENSG00000269680 Gene.

No data available for Mastermind for ENSG00000269680 Gene

Products for ENSG00000269680 Gene

Sources for ENSG00000269680 Gene