Aliases for ENSG00000269604 Gene

Subcategory (RNA class) for ENSG00000269604 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000269604 Gene

  • Novel Transcript, Antisense To FEM1A 5
  • NONHSAG024543.2 91
  • HSALNG0123421 164
  • Lnc-TICAM1-1 165
  • AC005523.2 5

External Ids for ENSG00000269604 Gene

Summaries for ENSG00000269604 Gene

GeneCards Summary for ENSG00000269604 Gene

ENSG00000269604 is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with ENSG00000269604 include Melanoma.

Additional gene information for ENSG00000269604 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000269604 Gene

Genomics for ENSG00000269604 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000269604 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J004794 Enhancer 0.6 ENCODE dbSUPER 600.7 +0.5 492 2 PRDM10 RBFOX2 SCRT2 SCRT1 ENSG00000269604 piR-31923 ENSG00000268536 FEM1A TICAM1
GH19J004796 Enhancer 0.4 Ensembl dbSUPER 600.7 -0.9 -942 0.2 POLR2A ENSG00000269604 piR-31923 FEM1A lnc-UHRF1-5 TICAM1
GH19J004790 Promoter/Enhancer 1.9 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.7 +3.9 3858 3 CREB1 GATAD2A CTCF ATF7 TEAD4 PRDM10 REST ZNF629 TFE3 ZNF512 ENSG00000268536 FEM1A ENSG00000267030 DUS3L SAFB2 YJU2 ENSG00000267255 ENSG00000267769 SAFB SH3GL1
GH19J004793 Enhancer 0.4 ENCODE dbSUPER 0.7 +2.0 2041 0.2 CBLL2 FEM1A piR-31923 ENSG00000269604 TICAM1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000269604 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000269604 Gene

Genomic Locations for ENSG00000269604 Gene
chr19:4,791,745-4,795,559
(GRCh38/hg38)
Size:
3,815 bases
Orientation:
Minus strand
chr19:4,791,757-4,795,571
(GRCh37/hg19)
Size:
3,815 bases
Orientation:
Minus strand

Genomic View for ENSG00000269604 Gene

Genes around ENSG00000269604 on UCSC Golden Path with GeneCards custom track
ENSG00000269604 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000269604 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000269604 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000269604 Gene

Proteins for ENSG00000269604 Gene

Post-translational modifications for ENSG00000269604 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000269604 Gene

Domains & Families for ENSG00000269604 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000269604 Gene

Function for ENSG00000269604 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000269604 Gene

Localization for ENSG00000269604 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000269604 Gene

Pathways & Interactions for ENSG00000269604 Gene

PathCards logo

SuperPathways for ENSG00000269604 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000269604 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000269604 Gene

Drugs & Compounds for ENSG00000269604 Gene

No Compound Related Data Available

Transcripts for ENSG00000269604 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000269604 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00000BFCC4_9606 lncRNA 3568 4

Ensembl: ENST00000601192 (view in UCSC) ,

LncBook: HSALNT0254897,

LNCipedia: lnc-TICAM1-1:2,

NONCODE: NONHSAT060655.2,

URS00001E8C40_9606 lncRNA 403 4

Ensembl: ENST00000596170 (view in UCSC) ,

LncBook: HSALNT0254898,

LNCipedia: lnc-TICAM1-1:1,

NONCODE: NONHSAT060658.2,

ENSG00000269604 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000269604 Gene

No ASD Table

Relevant External Links for ENSG00000269604 Gene

GeneLoc Exon Structure for
ENSG00000269604

No data available for mRNA/cDNA for ENSG00000269604 Gene

Expression for ENSG00000269604 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000269604 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000269604 Gene

This gene is overexpressed in Muscle - Skeletal (x20.8).
genes like me logo Genes that share expression patterns with ENSG00000269604: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000269604 Gene

Orthologs for ENSG00000269604 Gene

Evolution for ENSG00000269604 Gene

ENSEMBL:
Gene Tree for ENSG00000269604 (if available)
TreeFam:
Gene Tree for ENSG00000269604 (if available)

No data available for Orthologs for ENSG00000269604 Gene

Paralogs for ENSG00000269604 Gene

No data available for Paralogs for ENSG00000269604 Gene

Variants for ENSG00000269604 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000269604 Gene

Disorders for ENSG00000269604 Gene

MalaCards: The human disease database

(1) MalaCards diseases for ENSG00000269604 Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
melanoma
  • malignant melanoma
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for ENSG00000269604

genes like me logo Genes that share disorders with ENSG00000269604: view

No data available for UniProtKB/Swiss-Prot and Genatlas for ENSG00000269604 Gene

Publications for ENSG00000269604 Gene

No publications were found for ENSG00000269604 Gene.

No data available for Mastermind for ENSG00000269604 Gene

Products for ENSG00000269604 Gene

Sources for ENSG00000269604 Gene