Aliases for ENSG00000268947 Gene

Subcategory (RNA class) for ENSG00000268947 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000268947 Gene

  • Novel Transcript 5
  • NONHSAG025565.2 91
  • HSALNG0125591 164
  • AC002128.1 5
  • Lnc-USF2-2 165

External Ids for ENSG00000268947 Gene

Previous GeneCards Identifiers for ENSG00000268947 Gene

  • GC19P035754
  • GC19P035954

Summaries for ENSG00000268947 Gene

GeneCards Summary for ENSG00000268947 Gene

ENSG00000268947 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000268947 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000268947 Gene

Genomics for ENSG00000268947 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000268947 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J035262 Enhancer 0.8 Ensembl dbSUPER 600.7 -0.3 -345 0.2 ZIC2 ZNF501 ZNF600 ZNF341 ZNF148 POLR2A ZNF513 GLI4 HIC1 ZNF843 ENSG00000268947 ALKBH6 LOC105372380 USF2 LSR
GH19J035264 Enhancer 0.7 ENCODE dbSUPER 600.7 +1.3 1331 0.2 PRDM1 ZNF10 ZBTB17 ZNF335 MXD4 ZFP37 POLR2A ZNF121 ENSG00000268947 HSALNG0125590 USF2 LSR
GH19J034994 Promoter/Enhancer 2.9 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 12.4 -260.6 -260647 16.1 SP1 HNRNPL CREB1 GATAD2A YBX1 PRDM10 ZNF629 REST TFE3 SOX13 GRAMD1A TMEM147-AS1 ZNF599 HAUS5 LSM14A KMT2B ZNF792 ZNF302 ZNF181 GARRE1
GH19J035641 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 12.4 +382.6 382604 8.7 ZNF221 SP1 HNRNPL CREB1 ATF7 PRDM10 ZNF629 REST TFE3 SIX5 ETV2 COX6B1 KMT2B TMEM147-AS1 RBM42 PROSER3 HAUS5 ZNF792 ZNF529 ZNF566
GH19J035897 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 12.4 +641.2 641212 13 ZNF221 SP1 CREB1 GATAD2A PRDM10 ZNF629 LEF1 IKZF1 KDM1A ZNF692 NFKBID TYROBP HCST ENSG00000280194 ZNF567 TMEM147-AS1 ZNF790 ZNF566 ZNF529 ZNF260
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000268947 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000268947 Gene

Genomic Locations for ENSG00000268947 Gene
chr19:35,262,846-35,264,804
(GRCh38/hg38)
Size:
1,959 bases
Orientation:
Plus strand
chr19:35,753,749-35,755,707
(GRCh37/hg19)
Size:
1,959 bases
Orientation:
Plus strand

Genomic View for ENSG00000268947 Gene

Genes around ENSG00000268947 on UCSC Golden Path with GeneCards custom track
ENSG00000268947 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000268947 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000268947 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000268947 Gene

Proteins for ENSG00000268947 Gene

Post-translational modifications for ENSG00000268947 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000268947 Gene

Domains & Families for ENSG00000268947 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000268947 Gene

Function for ENSG00000268947 Gene

Phenotypes From GWAS Catalog for ENSG00000268947 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000268947 Gene

Localization for ENSG00000268947 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000268947 Gene

Pathways & Interactions for ENSG00000268947 Gene

PathCards logo

SuperPathways for ENSG00000268947 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000268947 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000268947 Gene

Drugs & Compounds for ENSG00000268947 Gene

No Compound Related Data Available

Transcripts for ENSG00000268947 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000268947 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000149345_9606 lncRNA 1016 4

Ensembl: ENST00000602262 (view in UCSC) ,

LncBook: HSALNT0258842,

LNCipedia: lnc-USF2-2:1,

NONCODE: NONHSAT065815.2,

ENSG00000268947 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000268947 Gene

No ASD Table

Relevant External Links for ENSG00000268947 Gene

GeneLoc Exon Structure for
ENSG00000268947

No data available for mRNA/cDNA for ENSG00000268947 Gene

Expression for ENSG00000268947 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000268947 Gene

genes like me logo Genes that share expression patterns with ENSG00000268947: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000268947 Gene

Orthologs for ENSG00000268947 Gene

Evolution for ENSG00000268947 Gene

ENSEMBL:
Gene Tree for ENSG00000268947 (if available)
TreeFam:
Gene Tree for ENSG00000268947 (if available)

No data available for Orthologs for ENSG00000268947 Gene

Paralogs for ENSG00000268947 Gene

No data available for Paralogs for ENSG00000268947 Gene

Variants for ENSG00000268947 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000268947 Gene

Disorders for ENSG00000268947 Gene

No disorders were found for ENSG00000268947 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000268947 Gene

Publications for ENSG00000268947 Gene

No publications were found for ENSG00000268947 Gene.

No data available for Mastermind for ENSG00000268947 Gene

Products for ENSG00000268947 Gene

Sources for ENSG00000268947 Gene