Aliases for ENSG00000268520 Gene

Subcategory (RNA class) for ENSG00000268520 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000268520 Gene

  • Novel Transcript, Sense Intronic To ETFB 5
  • NONHSAG026360.2 91
  • HSALNG0127208 164
  • Lnc-CLDND2-1 165
  • AC008750.5 5

External Ids for ENSG00000268520 Gene

Previous GeneCards Identifiers for ENSG00000268520 Gene

  • GC19M051864

Summaries for ENSG00000268520 Gene

GeneCards Summary for ENSG00000268520 Gene

ENSG00000268520 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000268520 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000268520 Gene

Genomics for ENSG00000268520 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000268520 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J051358 Promoter/Enhancer 2.6 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 600.7 +1.7 1742 11.2 ARHGAP35 SP1 HNRNPL GATAD2A ATF7 PRDM10 ZNF629 REST TFE3 SOX13 ETFB ENSG00000268520 CLDND2 ZNF841 ZNF616 ZNF577 POLD1 ZNF175 ZNF836 ZNF766
GH19J051353 Promoter/Enhancer 1.4 EPDnew ENCODE CraniofacialAtlas 0.4 +11.0 11019 1.6 HNRNPL GATAD2A TFE3 SOX13 ZIC2 RBFOX2 PKNOX1 RXRB POLR2A GABPA ETFB SIGLEC8 RPL7P51 SIGLEC14 SIGLEC5 ZNF432 ENSG00000267984 ENSG00000268520 ENSG00000269403 VSIG10L
GH19J051349 Enhancer 1.2 Ensembl ENCODE 0.4 +14.1 14147 3.9 HNRNPL GATAD2A ZNF512 LEF1 IKZF1 NFKBIZ JUND MTA2 PHF21A RBFOX2 ZNF616 POLD1 ZNF841 VSIG10L LRRC4B ZNF480 ZNF836 ZNF766 ZNF577 ENSG00000269535
GH19J051345 Enhancer 0.3 Ensembl 0.4 +20.0 20043 0.6 HNRNPL RBFOX2 ENSG00000267984 VSIG10L ENSG00000268520 ETFB
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000268520 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000268520 Gene

Genomic Locations for ENSG00000268520 Gene
chr19:51,361,712-51,365,544
(GRCh38/hg38)
Size:
3,833 bases
Orientation:
Minus strand
chr19:51,864,966-51,868,798
(GRCh37/hg19)
Size:
3,833 bases
Orientation:
Minus strand

Genomic View for ENSG00000268520 Gene

Genes around ENSG00000268520 on UCSC Golden Path with GeneCards custom track
ENSG00000268520 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000268520 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000268520 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000268520 Gene

Proteins for ENSG00000268520 Gene

Post-translational modifications for ENSG00000268520 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000268520 Gene

Domains & Families for ENSG00000268520 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000268520 Gene

Function for ENSG00000268520 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000268520 Gene

Localization for ENSG00000268520 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000268520 Gene

Pathways & Interactions for ENSG00000268520 Gene

PathCards logo

SuperPathways for ENSG00000268520 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000268520 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000268520 Gene

Drugs & Compounds for ENSG00000268520 Gene

No Compound Related Data Available

Transcripts for ENSG00000268520 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000268520 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000383D6B_9606 lncRNA 473 4

Ensembl: ENST00000595500 (view in UCSC) ,

LncBook: HSALNT0261717,

LNCipedia: lnc-CLDND2-1:1,

NONCODE: NONHSAT067435.2,

ENSG00000268520 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000268520 Gene

No ASD Table

Relevant External Links for ENSG00000268520 Gene

GeneLoc Exon Structure for
ENSG00000268520

No data available for mRNA/cDNA for ENSG00000268520 Gene

Expression for ENSG00000268520 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000268520 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000268520 Gene

This gene is overexpressed in Liver (x5.2).
genes like me logo Genes that share expression patterns with ENSG00000268520: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000268520 Gene

Orthologs for ENSG00000268520 Gene

Evolution for ENSG00000268520 Gene

ENSEMBL:
Gene Tree for ENSG00000268520 (if available)
TreeFam:
Gene Tree for ENSG00000268520 (if available)

No data available for Orthologs for ENSG00000268520 Gene

Paralogs for ENSG00000268520 Gene

No data available for Paralogs for ENSG00000268520 Gene

Variants for ENSG00000268520 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000268520 Gene

Disorders for ENSG00000268520 Gene

Additional Disease Information for ENSG00000268520

No disorders were found for ENSG00000268520 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000268520 Gene

Publications for ENSG00000268520 Gene

No publications were found for ENSG00000268520 Gene.

No data available for Mastermind for ENSG00000268520 Gene

Products for ENSG00000268520 Gene

Sources for ENSG00000268520 Gene