Aliases for ENSG00000267780 Gene

Subcategory (RNA class) for ENSG00000267780 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000267780 Gene

  • Novel Transcript 5
  • NONHSAG024253.2 91
  • HSALNG0122795 164
  • Lnc-CTDP1-2 165
  • AC021594.2 5

External Ids for ENSG00000267780 Gene

Previous GeneCards Identifiers for ENSG00000267780 Gene

  • GC18P077552

Summaries for ENSG00000267780 Gene

GeneCards Summary for ENSG00000267780 Gene

ENSG00000267780 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000267780 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000267780 Gene

Genomics for ENSG00000267780 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000267780 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J079790 Promoter/Enhancer 1.5 FANTOM5 Ensembl ENCODE 600.7 -1.1 -1069 2.6 GATAD2A TFE3 NFKBIZ RCOR2 RXRB IRF2 SP1 CEBPA SOX13 CEBPB ENSG00000267780 KCNG2 RBFADN CTDP1 SLC66A2 ENSG00000266924 LOC105376875
GH18J079793 Enhancer 0.5 ENCODE 600.7 +0.4 430 0.2 RNF2 SPI1 REST POLR2A MYC MAX ENSG00000267780 RBFADN KCNG2 LOC105376875
GH18J079795 Promoter 0.9 Ensembl 0.7 +2.8 2775 0.2 GATAD2A TFE3 SOX13 NFKBIZ RCOR2 ZBTB26 RNF2 ZKSCAN8 TGIF2 FOXA2 RBFADN ENSG00000267780 KCNG2 LOC105376875
GH18J079796 Enhancer 0.7 ENCODE 0.7 +4.5 4534 1.1 ZSCAN4 SCRT2 ZNF792 CTCF KLF9 RAD21 ZBTB10 ZNF23 ZBTB26 MYNN KCNG2 RBFADN ADNP2 ATP9B ENSG00000267127 ENSG00000267780 LOC105376875
GH18J079794 Promoter/Enhancer 0.6 FANTOM5 Ensembl 0.7 +2.2 2196 0.2 CEBPA CTDP1 SLC66A2 ADNP2 NFATC1 ENSG00000267780 KCNG2 LOC105376875
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000267780 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000267780 Gene

Genomic Locations for ENSG00000267780 Gene
chr18:79,792,726-79,816,529
(GRCh38/hg38)
Size:
23,804 bases
Orientation:
Plus strand
chr18:77,552,726-77,576,365
(GRCh37/hg19)
Size:
23,640 bases
Orientation:
Plus strand

Genomic View for ENSG00000267780 Gene

Genes around ENSG00000267780 on UCSC Golden Path with GeneCards custom track
ENSG00000267780 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000267780 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000267780 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000267780 Gene

Proteins for ENSG00000267780 Gene

Post-translational modifications for ENSG00000267780 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000267780 Gene

Domains & Families for ENSG00000267780 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000267780 Gene

Function for ENSG00000267780 Gene

Phenotypes From GWAS Catalog for ENSG00000267780 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000267780 Gene

Localization for ENSG00000267780 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000267780 Gene

Pathways & Interactions for ENSG00000267780 Gene

PathCards logo

SuperPathways for ENSG00000267780 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000267780 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000267780 Gene

Drugs & Compounds for ENSG00000267780 Gene

No Compound Related Data Available

Transcripts for ENSG00000267780 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000267780 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000076B09B_9606 lncRNA 527 3

Ensembl: ENST00000592499 (view in UCSC) ,

LncBook: HSALNT0253843,

LNCipedia: lnc-CTDP1-2:2,

URS00005532D8_9606 lncRNA 363 2

LNCipedia: lnc-CTDP1-2:1,

NONCODE: NONHSAT060058.2,

ENSG00000267780 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000267780 Gene

No ASD Table

Relevant External Links for ENSG00000267780 Gene

GeneLoc Exon Structure for
ENSG00000267780

No data available for mRNA/cDNA for ENSG00000267780 Gene

Expression for ENSG00000267780 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000267780 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000267780 Gene

This gene is overexpressed in Whole Blood (x23.3) and Testis (x12.6).
genes like me logo Genes that share expression patterns with ENSG00000267780: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000267780 Gene

Orthologs for ENSG00000267780 Gene

Evolution for ENSG00000267780 Gene

ENSEMBL:
Gene Tree for ENSG00000267780 (if available)
TreeFam:
Gene Tree for ENSG00000267780 (if available)

No data available for Orthologs for ENSG00000267780 Gene

Paralogs for ENSG00000267780 Gene

No data available for Paralogs for ENSG00000267780 Gene

Variants for ENSG00000267780 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000267780 Gene

Disorders for ENSG00000267780 Gene

Additional Disease Information for ENSG00000267780

No disorders were found for ENSG00000267780 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000267780 Gene

Publications for ENSG00000267780 Gene

No publications were found for ENSG00000267780 Gene.

No data available for Mastermind for ENSG00000267780 Gene

Products for ENSG00000267780 Gene

Sources for ENSG00000267780 Gene