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Aliases for ENSG00000267724 Gene

Subcategory (RNA class) for ENSG00000267724 Gene

lncRNA

Quality Score for this RNA gene is

15.2

Aliases for ENSG00000267724 Gene

  • Novel Transcript, Antisense To HDHD2 5
  • AC012254.3 5

External Ids for ENSG00000267724 Gene

ORGUL Members for ENSG00000267724 Gene

Previous GeneCards Identifiers for ENSG00000267724 Gene

  • GC18P044636

Summaries for ENSG00000267724 Gene

GeneCards Summary for ENSG00000267724 Gene

ENSG00000267724 is an RNA Gene, and is affiliated with the lncRNA class.

fRNAdb sequence ontologies for ENSG00000267724 Gene - the ORGUL cluster for this gene includes several descriptions:

  • antisense_RNA: Antisense RNA is RNA that is transcribed from the coding, rather than the template, strand of DNA. It is therefore complementary to mRNA.

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for ENSG00000267724

Additional gene information for ENSG00000267724 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for ENSG00000267724 Gene

Genomics for ENSG00000267724 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000267724 Gene

Promoters and enhancers for ENSG00000267724 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J048016 Enhancer 1.3 Ensembl ENCODE dbSUPER 26.6 +914.8 914796 7.9 CC2D1A CTCF CEBPG NFIB ZSCAN21 SP7 ZNF174 SP1 PRDM1 MZF1 ENSG00000267724 SMAD2 IER3IP1 LOC105372101 ENSG00000278891
GH18J046172 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 14.1 -931.5 -931545 3.2 ZNF652 SP1 ZFX CTCF ELF3 NKRF POLR2A GTF2F1 ZNF687 ZSCAN21 C18orf25 HAUS1 EPG5 ENSG00000267724 GC18P046277
GH18J047184 Enhancer 1.1 Ensembl ENCODE 23 +78.8 78755 1.4 CBFA2T2 BACH1 MAFK TFE3 TRIM24 SMARCA4 ZNF547 DPF2 NFE2L2 HDAC1 ENSG00000267724 HDHD2 IER3IP1 KATNAL2 GC18M047235 RNU6-1131P GC18P047085
GH18J046248 Enhancer 1.2 FANTOM5 ENCODE 14.4 -855.9 -855930 3.8 ZSCAN21 JUND SP7 CREM PRDM1 MLLT1 IKZF1 CREB1 ZNF600 PRDM10 ENSG00000267724 IER3IP1 PSTPIP2 C18orf25 ATP5F1A EPG5 GC18P046277
GH18J047911 Promoter/Enhancer 1.5 Ensembl ENCODE dbSUPER 10.9 +806.6 806578 2 CC2D1A CBFA2T2 TFE3 TRIM24 SP1 ZNF644 RXRA DPF2 IKZF1 ZNF24 ENSG00000279366 MTCO2P2 ENSG00000267724 IER3IP1 SMAD2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000267724 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000267724 Gene

Genomic Locations for ENSG00000267724 Gene
chr18:47,105,946-47,108,062
(GRCh38/hg38)
Size:
2,117 bases
Orientation:
Plus strand
chr18:44,632,317-44,634,433
(GRCh37/hg19)
Size:
2,117 bases
Orientation:
Plus strand

Genomic View for ENSG00000267724 Gene

Genes around ENSG00000267724 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000267724 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000267724 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for ENSG00000267724 Gene

ORGUL Member Location for ENSG00000267724 gene

No data available for RefSeq DNA sequence for ENSG00000267724 Gene

Proteins for ENSG00000267724 Gene

Post-translational modifications for ENSG00000267724 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000267724 Gene

Domains & Families for ENSG00000267724 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ENSG00000267724 Gene

Function for ENSG00000267724 Gene

Phenotypes From GWAS Catalog for ENSG00000267724 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000267724 Gene

Localization for ENSG00000267724 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000267724 Gene

Pathways & Interactions for ENSG00000267724 Gene

PathCards logo

SuperPathways for ENSG00000267724 Gene

No Data Available

Interacting Proteins for ENSG00000267724 Gene

Gene Ontology (GO) - Biological Process for ENSG00000267724 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ENSG00000267724 Gene

Drugs & Compounds for ENSG00000267724 Gene

No Compound Related Data Available

Transcripts for ENSG00000267724 Gene

fRNAdb Secondary structures for ENSG00000267724 Gene

  • NONHSAG023798

mRNA/cDNA for ENSG00000267724 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000267724 Gene

No ASD Table

Relevant External Links for ENSG00000267724 Gene

GeneLoc Exon Structure for
ENSG00000267724

Expression for ENSG00000267724 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ENSG00000267724 Gene

genes like me logo Genes that share expression patterns with ENSG00000267724: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000267724 Gene

Orthologs for ENSG00000267724 Gene

Evolution for ENSG00000267724 Gene

ENSEMBL:
Gene Tree for ENSG00000267724 (if available)
TreeFam:
Gene Tree for ENSG00000267724 (if available)

No data available for Orthologs for ENSG00000267724 Gene

Paralogs for ENSG00000267724 Gene

No data available for Paralogs for ENSG00000267724 Gene

Variants for ENSG00000267724 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000267724 Gene

Disorders for ENSG00000267724 Gene

No disorders were found for ENSG00000267724 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000267724 Gene

Publications for ENSG00000267724 Gene

  1. Identification and classification of conserved RNA secondary structures in the human genome. (PMID: 16628248) Pedersen JS … Haussler D (PLoS computational biology 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

No data available for External Links for ENSG00000267724 Gene

Products for ENSG00000267724 Gene

Sources for ENSG00000267724 Gene

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