Aliases for ENSG00000267653 Gene

Subcategory (RNA class) for ENSG00000267653 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000267653 Gene

  • Novel Transcript 5
  • NONHSAG022624.2 91
  • HSALNG0118433 164
  • Lnc-ABCA5-6 165
  • AC002546.1 5

External Ids for ENSG00000267653 Gene

Previous GeneCards Identifiers for ENSG00000267653 Gene

  • GC17M067473

Summaries for ENSG00000267653 Gene

GeneCards Summary for ENSG00000267653 Gene

ENSG00000267653 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000267653 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000267653 Gene

Genomics for ENSG00000267653 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000267653 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J069500 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 600.7 -0.2 -168 2.6 GATAD2A ATF7 PRDM10 ZNF629 ZIC2 POLR2A CEBPA SCRT2 ZNF792 SOX13 MAP2K6 ENSG00000267653 RF00017-2524 KCNJ16
GH17J069506 Promoter 0.6 Ensembl 600.7 -1.7 -1746 0.2 ARID3A STAT5A MTA2 ZNF24 ENSG00000267653 RF00017-2524 MAP2K6 KCNJ16
GH17J069479 Enhancer 0.4 Ensembl dbSUPER 6 +21.3 21255 0.6 NR3C1 ENSG00000267653 MAP2K6 LOC105371880 piR-43166-011 KCNJ16
GH17J069503 Promoter/Enhancer 1.2 Ensembl ENCODE dbSUPER 0.7 -2.2 -2246 0.4 RELA TCF12 IKZF2 TRIM22 PKNOX1 EED ARID3A DPF2 RELB RUNX3 RF00017-2524 ENSG00000267653 MAP2K6 KCNJ16
GH17J069492 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.4 +9.1 9050 1 TEAD4 SP1 CEBPB RCOR1 FOS JUND FOSL2 RAD21 RFX5 SMC3 HE856114 ENSG00000267653 LOC105371880 MAP2K6 KCNJ16
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000267653 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000267653 Gene

Genomic Locations for ENSG00000267653 Gene
chr17:69,475,426-69,501,755
(GRCh38/hg38)
Size:
26,330 bases
Orientation:
Minus strand
chr17:67,473,280-67,497,896
(GRCh37/hg19)
Size:
24,617 bases
Orientation:
Minus strand

Genomic View for ENSG00000267653 Gene

Genes around ENSG00000267653 on UCSC Golden Path with GeneCards custom track
ENSG00000267653 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000267653 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000267653 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000267653 Gene

Proteins for ENSG00000267653 Gene

Post-translational modifications for ENSG00000267653 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000267653 Gene

Domains & Families for ENSG00000267653 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000267653 Gene

Function for ENSG00000267653 Gene

Phenotypes From GWAS Catalog for ENSG00000267653 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000267653 Gene

Localization for ENSG00000267653 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000267653 Gene

Pathways & Interactions for ENSG00000267653 Gene

PathCards logo

SuperPathways for ENSG00000267653 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000267653 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000267653 Gene

Drugs & Compounds for ENSG00000267653 Gene

No Compound Related Data Available

Transcripts for ENSG00000267653 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000267653 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000061EE99_9606 lncRNA 584 4

Ensembl: ENST00000585537 (view in UCSC) ,

LncBook: HSALNT0244440,

LNCipedia: lnc-ABCA5-6:1,

NONCODE: NONHSAT055582.2,

URS00008BA006_9606 lncRNA 1075 2

LNCipedia: lnc-ABCA5-6:2,

NONCODE: NONHSAT055581.2,

URS0000D5B9EE_9606 lncRNA 2363 1

LNCipedia: lnc-ABCA5-6:4,

URS0000D5B413_9606 lncRNA 2350 1

LNCipedia: lnc-ABCA5-6:3,

ENSG00000267653 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000267653 Gene

No ASD Table

Relevant External Links for ENSG00000267653 Gene

GeneLoc Exon Structure for
ENSG00000267653

No data available for mRNA/cDNA for ENSG00000267653 Gene

Expression for ENSG00000267653 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000267653 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000267653 Gene

This gene is overexpressed in Adipose - Visceral (Omentum) (x11.2), Adipose - Subcutaneous (x10.0), Breast - Mammary Tissue (x5.4), and Nerve - Tibial (x4.5).
genes like me logo Genes that share expression patterns with ENSG00000267653: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000267653 Gene

Orthologs for ENSG00000267653 Gene

Evolution for ENSG00000267653 Gene

ENSEMBL:
Gene Tree for ENSG00000267653 (if available)
TreeFam:
Gene Tree for ENSG00000267653 (if available)

No data available for Orthologs for ENSG00000267653 Gene

Paralogs for ENSG00000267653 Gene

No data available for Paralogs for ENSG00000267653 Gene

Variants for ENSG00000267653 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000267653 Gene

Disorders for ENSG00000267653 Gene

Additional Disease Information for ENSG00000267653

No disorders were found for ENSG00000267653 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000267653 Gene

Publications for ENSG00000267653 Gene

No publications were found for ENSG00000267653 Gene.

No data available for Mastermind for ENSG00000267653 Gene

Products for ENSG00000267653 Gene

Sources for ENSG00000267653 Gene