Aliases for ENSG00000267610 Gene

Subcategory (RNA class) for ENSG00000267610 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for ENSG00000267610 Gene

  • Novel Transcript, Antisense To NFIX 5
  • NONHSAG024916.2 91
  • AC007787.1 5
  • Lnc-LYL1-3 165

External Ids for ENSG00000267610 Gene

Previous GeneCards Identifiers for ENSG00000267610 Gene

  • GC19M013181

Summaries for ENSG00000267610 Gene

GeneCards Summary for ENSG00000267610 Gene

ENSG00000267610 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000267610 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000267610 Gene

Genomics for ENSG00000267610 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000267610 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J013068 Promoter/Enhancer 1.5 Ensembl ENCODE dbSUPER 600.7 +1.5 1536 3.3 ARHGAP35 HNRNPL LEF1 IKZF1 JUND DDX20 MTA2 ZIC2 ZNF24 MTA1 ENSG00000267610 LYL1 NACC1 TRMT1 STX10 IER2 piR-51234 NFIX
GH19J013071 Promoter/Enhancer 0.7 Ensembl ENCODE dbSUPER 600.7 -0.7 -688 0.8 ENSG00000267610 STX10 IER2 ENSG00000279044 LYL1 NFIX
GH19J013072 Enhancer 0.2 dbSUPER 600.7 -1.7 -1677 0.1 ENSG00000267610 ENSG00000279044 LYL1 NFIX
GH19J013050 Promoter/Enhancer 2.2 VISTA FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 +15.1 15096 12.1 HNRNPL GATAD2A CTCF PRDM10 ZNF629 TFE3 LEF1 SOX13 IKZF1 NFKBIZ TRMT1 CCDC130 ZNF44 RFX1 ZNF20 ZNF490 ZNF136 TRIR ZNF564 LYL1
GH19J013076 Enhancer 1.6 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 -7.0 -6999 5.1 PRDM10 LEF1 ZNF692 MTA2 PHF21A ZIC2 PATZ1 ZNF24 DPF2 HDAC1 LYL1 KLF1 CALR PRDX2 STX10 ZNF490 ENSG00000279044 ENSG00000267610 NFIX
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000267610 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000267610 Gene

Genomic Locations for ENSG00000267610 Gene
chr19:13,069,792-13,071,374
(GRCh38/hg38)
Size:
1,583 bases
Orientation:
Minus strand
chr19:13,180,610-13,182,188
(GRCh37/hg19)
Size:
1,579 bases
Orientation:
Minus strand

Genomic View for ENSG00000267610 Gene

Genes around ENSG00000267610 on UCSC Golden Path with GeneCards custom track
ENSG00000267610 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000267610 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000267610 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000267610 Gene

Proteins for ENSG00000267610 Gene

Post-translational modifications for ENSG00000267610 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000267610 Gene

Domains & Families for ENSG00000267610 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000267610 Gene

Function for ENSG00000267610 Gene

Phenotypes From GWAS Catalog for ENSG00000267610 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000267610 Gene

Localization for ENSG00000267610 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000267610 Gene

Pathways & Interactions for ENSG00000267610 Gene

PathCards logo

SuperPathways for ENSG00000267610 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000267610 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000267610 Gene

Drugs & Compounds for ENSG00000267610 Gene

No Compound Related Data Available

Transcripts for ENSG00000267610 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000267610 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000781F69_9606 lncRNA 1583 3

Ensembl: ENST00000588095 (view in UCSC) ,

LNCipedia: lnc-LYL1-3:2,

NONCODE: NONHSAT061323.2,

URS000044EEF0_9606 lncRNA 1579 1

LNCipedia: lnc-LYL1-3:1,

ENSG00000267610 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000267610 Gene

No ASD Table

Relevant External Links for ENSG00000267610 Gene

GeneLoc Exon Structure for
ENSG00000267610

No data available for mRNA/cDNA for ENSG00000267610 Gene

Expression for ENSG00000267610 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000267610 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000267610 Gene

This gene is overexpressed in Brain - Cerebellum (x9.0) and Brain - Cerebellar Hemisphere (x6.7).
genes like me logo Genes that share expression patterns with ENSG00000267610: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000267610 Gene

Orthologs for ENSG00000267610 Gene

Evolution for ENSG00000267610 Gene

ENSEMBL:
Gene Tree for ENSG00000267610 (if available)
TreeFam:
Gene Tree for ENSG00000267610 (if available)

No data available for Orthologs for ENSG00000267610 Gene

Paralogs for ENSG00000267610 Gene

No data available for Paralogs for ENSG00000267610 Gene

Variants for ENSG00000267610 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000267610 Gene

Disorders for ENSG00000267610 Gene

Additional Disease Information for ENSG00000267610

No disorders were found for ENSG00000267610 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000267610 Gene

Publications for ENSG00000267610 Gene

No publications were found for ENSG00000267610 Gene.

No data available for Mastermind for ENSG00000267610 Gene

Products for ENSG00000267610 Gene

Sources for ENSG00000267610 Gene