Aliases for ENSG00000267576 Gene

Subcategory (RNA class) for ENSG00000267576 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for ENSG00000267576 Gene

  • Novel Transcript, Sense Intronic To TSPAN16 5
  • HSALNG0124012 164
  • Lnc-CCDC159-4 165
  • AC011472.3 5

External Ids for ENSG00000267576 Gene

Previous GeneCards Identifiers for ENSG00000267576 Gene

  • GC19P011432

Summaries for ENSG00000267576 Gene

GeneCards Summary for ENSG00000267576 Gene

ENSG00000267576 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000267576 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000267576 Gene

Genomics for ENSG00000267576 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000267576 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J011320 Promoter/Enhancer 1.3 Ensembl ENCODE 600.7 +1.2 1226 5.6 CEBPG CREB1 GATAD2A CTCF TEAD4 PRDM10 ZNF629 TFE3 LEF1 KDM1A ENSG00000267174 ENSG00000267576 TSPAN16 ILF3 TIMM29 ZNF844 ZNF433 ZNF627 KRI1 SWSAP1
GH19J011319 Promoter/Enhancer 1.1 Ensembl ENCODE 0.7 -2.5 -2494 1.8 PRDM10 RELA PATZ1 IKZF2 ZNF600 ZNF341 ZBTB44 KLF9 SP2 KLF7 ENSG00000267174 TSPAN16 SWSAP1 EPOR DOCK6 RGL3 ENSG00000267576 RF00017-2818 CCDC159
GH19J011317 Enhancer 0.6 ENCODE 0.7 -4.2 -4216 0.4 FOXA1 HMBOX1 RUNX3 CTBP1 ZSCAN5C FOXA2 TCF12 ZNF217 HHEX WT1 ENSG00000267174 TSPAN16 SWSAP1 EPOR RGL3 ENSG00000267576 RF00017-2818 CCDC159
GH19J011318 Promoter 0.4 Ensembl 0.7 -4.9 -4855 0.2 ZFP91 ENSG00000267174 ENSG00000267576 RF00017-2818 TSPAN16 CCDC159
GH19J011312 Enhancer 0.5 Ensembl 0.4 -8.8 -8755 2 ZNF7 ZNF300 SPI1 ZNF18 KDM1A ZNF558 ZNF280D ENSG00000267174 ZNF627 ZNF844 ZNF136 ZNF625 HNRNPA1P10 ILF3 ZNF763 ZNF439 ZNF44
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000267576 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000267576 Gene

Genomic Locations for ENSG00000267576 Gene
chr19:11,322,156-11,324,195
(GRCh38/hg38)
Size:
2,040 bases
Orientation:
Plus strand
chr19:11,432,832-11,434,871
(GRCh37/hg19)
Size:
2,040 bases
Orientation:
Plus strand

Genomic View for ENSG00000267576 Gene

Genes around ENSG00000267576 on UCSC Golden Path with GeneCards custom track
ENSG00000267576 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000267576 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000267576 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000267576 Gene

Proteins for ENSG00000267576 Gene

Post-translational modifications for ENSG00000267576 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000267576 Gene

Domains & Families for ENSG00000267576 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000267576 Gene

Function for ENSG00000267576 Gene

Phenotypes From GWAS Catalog for ENSG00000267576 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000267576 Gene

Localization for ENSG00000267576 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000267576 Gene

Pathways & Interactions for ENSG00000267576 Gene

PathCards logo

SuperPathways for ENSG00000267576 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000267576 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000267576 Gene

Drugs & Compounds for ENSG00000267576 Gene

No Compound Related Data Available

Transcripts for ENSG00000267576 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000267576 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000042B77F_9606 lncRNA 906 3

Ensembl: ENST00000586051 (view in UCSC) ,

LncBook: HSALNT0255796,

LNCipedia: lnc-CCDC159-4:1,

ENSG00000267576 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000267576 Gene

No ASD Table

Relevant External Links for ENSG00000267576 Gene

GeneLoc Exon Structure for
ENSG00000267576

No data available for mRNA/cDNA for ENSG00000267576 Gene

Expression for ENSG00000267576 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000267576 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000267576 Gene

This gene is overexpressed in Whole Blood (x11.2).
genes like me logo Genes that share expression patterns with ENSG00000267576: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000267576 Gene

Orthologs for ENSG00000267576 Gene

Evolution for ENSG00000267576 Gene

ENSEMBL:
Gene Tree for ENSG00000267576 (if available)
TreeFam:
Gene Tree for ENSG00000267576 (if available)

No data available for Orthologs for ENSG00000267576 Gene

Paralogs for ENSG00000267576 Gene

No data available for Paralogs for ENSG00000267576 Gene

Variants for ENSG00000267576 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000267576 Gene

Disorders for ENSG00000267576 Gene

Additional Disease Information for ENSG00000267576

No disorders were found for ENSG00000267576 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000267576 Gene

Publications for ENSG00000267576 Gene

No publications were found for ENSG00000267576 Gene.

No data available for Mastermind for ENSG00000267576 Gene

Products for ENSG00000267576 Gene

Sources for ENSG00000267576 Gene