Aliases for ENSG00000267546 Gene

Subcategory (RNA class) for ENSG00000267546 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000267546 Gene

  • Novel Transcript, Antisense To PRCD 5
  • NONHSAG022823.2 91
  • HSALNG0118852 164
  • AC015802.4 5
  • Lnc-CYGB-3 165

External Ids for ENSG00000267546 Gene

Previous GeneCards Identifiers for ENSG00000267546 Gene

  • GC17M074543

Summaries for ENSG00000267546 Gene

GeneCards Summary for ENSG00000267546 Gene

ENSG00000267546 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000267546 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000267546 Gene

Genomics for ENSG00000267546 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000267546 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J076555 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 616.2 -1.8 -1775 8.1 BRCA1 ARHGAP35 HNRNPL CREB1 CTCF ATF7 PRDM10 ZNF629 TFE3 RFX1 ENSG00000267546 CYGB SNORD1B SNORD1C piR-36494 piR-61919 ENSG00000267543 SNHG16 SRSF2 UNK
GH17J076734 Promoter/Enhancer 2.6 UCNEbase EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 67.2 -179.6 -179576 7.8 ARHGAP35 SP1 HNRNPL CREB1 GATAD2A PRDM10 ZNF629 REST TFE3 ZNF512 SRSF2 MFSD11 NONHSAG022835.2 MN297510 MIR636 lnc-JMJD6-1 UNK ENSG00000267342 TRIM65 ENSG00000266980
GH17J075776 Promoter/Enhancer 2.8 UCNEbase EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 49.7 +775.8 775793 11.6 RNF2 ARHGAP35 SP1 HNRNPL CREB1 GATAD2A CTCF ZBTB33 ARID3A TEAD4 UNK SRSF2 NUP85 NT5C ENSG00000267342 TRIM65 ENSG00000266980 GGA3 ENSG00000267546 METTL23
GH17J076258 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 41.4 +289.7 289708 19.6 ARHGAP35 SP1 HNRNPL CREB1 GATAD2A ATF7 PRDM10 ZNF629 TFE3 LEF1 UBALD2 UNK ENSG00000267342 SRSF2 TRIM65 ENSG00000267546 ENSG00000266980 EXOC7 RNF157 PRPSAP1
GH17J076380 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 39.7 +173.7 173722 7.3 RNF2 HNRNPL GATAD2A CTCF PRDM10 ZNF629 TFE3 SOX13 IKZF1 NFKBIZ SPHK1 PRPSAP1 UNK SRSF2 ENSG00000267342 ENSG00000266980 TRIM65 ENSG00000267546 SAP30BP METTL23
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000267546 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000267546 Gene

Genomic Locations for ENSG00000267546 Gene
chr17:76,545,668-76,557,683
(GRCh38/hg38)
Size:
12,016 bases
Orientation:
Minus strand
chr17:74,541,750-74,553,765
(GRCh37/hg19)
Size:
12,016 bases
Orientation:
Minus strand

Genomic View for ENSG00000267546 Gene

Genes around ENSG00000267546 on UCSC Golden Path with GeneCards custom track
ENSG00000267546 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000267546 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000267546 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000267546 Gene

Proteins for ENSG00000267546 Gene

Post-translational modifications for ENSG00000267546 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000267546 Gene

Domains & Families for ENSG00000267546 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000267546 Gene

Function for ENSG00000267546 Gene

Phenotypes From GWAS Catalog for ENSG00000267546 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000267546 Gene

Localization for ENSG00000267546 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000267546 Gene

Pathways & Interactions for ENSG00000267546 Gene

PathCards logo

SuperPathways for ENSG00000267546 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000267546 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000267546 Gene

Drugs & Compounds for ENSG00000267546 Gene

No Compound Related Data Available

Transcripts for ENSG00000267546 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000267546 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000321DF6_9606 lncRNA 578 4

Ensembl: ENST00000589963 (view in UCSC) ,

LncBook: HSALNT0245430,

LNCipedia: lnc-CYGB-3:3,

NONCODE: NONHSAT056033.2,

URS00004A6DD2_9606 lncRNA 570 4

Ensembl: ENST00000592622 (view in UCSC) ,

LncBook: HSALNT0245436,

LNCipedia: lnc-CYGB-3:2,

NONCODE: NONHSAT056036.2,

URS0000529C07_9606 lncRNA 538 4

Ensembl: ENST00000607136 (view in UCSC) ,

LncBook: HSALNT0245437,

LNCipedia: lnc-CYGB-3:5,

NONCODE: NONHSAT176588.1,

URS00003CCADC_9606 lncRNA 474 4

Ensembl: ENST00000591967 (view in UCSC) ,

LncBook: HSALNT0245434,

LNCipedia: lnc-CYGB-3:4,

NONCODE: NONHSAT056035.2,

ENSG00000267546 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000267546 Gene

No ASD Table

Relevant External Links for ENSG00000267546 Gene

GeneLoc Exon Structure for
ENSG00000267546

No data available for mRNA/cDNA for ENSG00000267546 Gene

Expression for ENSG00000267546 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000267546 Gene

genes like me logo Genes that share expression patterns with ENSG00000267546: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000267546 Gene

Orthologs for ENSG00000267546 Gene

Evolution for ENSG00000267546 Gene

ENSEMBL:
Gene Tree for ENSG00000267546 (if available)
TreeFam:
Gene Tree for ENSG00000267546 (if available)

No data available for Orthologs for ENSG00000267546 Gene

Paralogs for ENSG00000267546 Gene

No data available for Paralogs for ENSG00000267546 Gene

Variants for ENSG00000267546 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000267546 Gene

Disorders for ENSG00000267546 Gene

No disorders were found for ENSG00000267546 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000267546 Gene

Publications for ENSG00000267546 Gene

No publications were found for ENSG00000267546 Gene.

No data available for Mastermind for ENSG00000267546 Gene

Products for ENSG00000267546 Gene

Sources for ENSG00000267546 Gene