ENSG00000267342 Gene (RNA Gene)

 

GC17P075897
GIFtS:
6
See more...

Aliases for ENSG00000267342 Gene

Subcategory (RNA class) for ENSG00000267342 Gene

lncRNA

Number of RNA Genes sources:

1 / 17

Aliases for ENSG00000267342 Gene

  • Novel Transcript, Antisense To MRPL38 5
  • NONHSAG022789.2 91
  • AC087289.2 5

External Ids for ENSG00000267342 Gene

Previous GeneCards Identifiers for ENSG00000267342 Gene

  • GC17P073894

Summaries for ENSG00000267342 Gene

GeneCards Summary for ENSG00000267342 Gene

ENSG00000267342 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000267342 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000267342 Gene

Genomics for ENSG00000267342 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for ENSG00000267342 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH17J075894 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas 600.7 -0.5 -535 3.3 HNRNPL CTCF PRDM10 NFKBIZ ZNF692 POLR2A BACH1 JUND LARP7 ZNF143 TRIM65 ENSG00000267342 lnc-MRPL38-1 FBF1 SNHG16 MIF4GD ENSG00000267078 SPHK1 ST6GALNAC2 RF00017-2555
GH17J076734 Promoter/Enhancer 2.6 UCNEbase EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 146.1 +840.2 840199 7.8 ARHGAP35 SP1 HNRNPL CREB1 GATAD2A PRDM10 ZNF629 REST TFE3 ZNF512 SRSF2 MFSD11 NONHSAG022835.2 MN297510 MIR636 lnc-JMJD6-1 UNK ENSG00000267342 TRIM65 ENSG00000266980
GH17J075776 Promoter/Enhancer 2.8 UCNEbase EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 82.5 -115.2 -115170 11.6 RNF2 ARHGAP35 SP1 HNRNPL CREB1 GATAD2A CTCF ZBTB33 ARID3A TEAD4 UNK SRSF2 NUP85 NT5C ENSG00000267342 TRIM65 ENSG00000266980 GGA3 ENSG00000267546 METTL23
GH17J076258 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 85.3 +370.9 370915 19.6 ARHGAP35 SP1 HNRNPL CREB1 GATAD2A ATF7 PRDM10 ZNF629 TFE3 LEF1 UBALD2 UNK ENSG00000267342 SRSF2 TRIM65 ENSG00000267546 ENSG00000266980 EXOC7 RNF157 PRPSAP1
GH17J075085 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 59 -805.6 -805564 11.9 ARHGAP35 HNRNPL CREB1 GATAD2A ZBTB33 TEAD4 PRDM10 ZNF629 TFE3 LEF1 SLC16A5 ENSG00000206713 UNK NUP85 NT5C GGA3 ENSG00000266980 ENSG00000267342 NAT9 TRIM65
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000267342 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000267342 Gene

Genomic Locations for ENSG00000267342 Gene
chr17:75,897,060-75,900,148
(GRCh38/hg38)
Size:
3,089 bases
Orientation:
Plus strand
chr17:73,893,141-73,896,229
(GRCh37/hg19)
Size:
3,089 bases
Orientation:
Plus strand

Genomic View for ENSG00000267342 Gene

Genes around ENSG00000267342 on UCSC Golden Path with GeneCards custom track
ENSG00000267342 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000267342 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000267342 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

No data available for RefSeq DNA sequence for ENSG00000267342 Gene

Proteins for ENSG00000267342 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for ENSG00000267342 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000267342 Gene

Domains & Families for ENSG00000267342 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000267342 Gene

Function for ENSG00000267342 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for ENSG00000267342 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000267342 Gene

Localization for ENSG00000267342 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000267342 Gene

Pathways & Interactions for ENSG00000267342 Gene

PathCards logo

SuperPathways for ENSG00000267342 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000267342 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000267342 Gene

Drugs & Compounds for ENSG00000267342 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for ENSG00000267342 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000267342 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00002F1074_9606 lncRNA 1419 2

Ensembl: ENST00000587267 (view in UCSC) ,

NONCODE: NONHSAT055959.2,

ENSG00000267342 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000267342 Gene

No ASD Table

Relevant External Links for ENSG00000267342 Gene

GeneLoc Exon Structure for
ENSG00000267342

No data available for mRNA/cDNA for ENSG00000267342 Gene

Expression for ENSG00000267342 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000267342 Gene

mRNA expression in normal human tissues for ENSG00000267342 Gene
mRNA expression by GTEx for ENSG00000267342 Gene
genes like me logo Genes that share expression patterns with ENSG00000267342: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000267342 Gene

Orthologs for ENSG00000267342 Gene

Evolution for ENSG00000267342 Gene

ENSEMBL:
Gene Tree for ENSG00000267342 (if available)
TreeFam:
Gene Tree for ENSG00000267342 (if available)

No data available for Orthologs for ENSG00000267342 Gene

Paralogs for ENSG00000267342 Gene

No data available for Paralogs for ENSG00000267342 Gene

Variants for ENSG00000267342 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000267342 Gene

Disorders for ENSG00000267342 Gene

No disorders were found for ENSG00000267342 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000267342 Gene

Publications for ENSG00000267342 Gene

No publications were found for ENSG00000267342 Gene.

No data available for Mastermind for ENSG00000267342 Gene

Products for ENSG00000267342 Gene

Sources for ENSG00000267342 Gene