Aliases for ENSG00000267279 Gene

Data sources for ENSG00000267279 Gene:

Subcategory (RNA class) for ENSG00000267279 Gene

lncRNA

Aliases for ENSG00000267279 Gene

External Ids for ENSG00000267279 Gene

Summaries for ENSG00000267279 Gene

GeneCards Summary for ENSG00000267279 Gene

ENSG00000267279 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000267279 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000267279 Gene

Genomics for ENSG00000267279 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000267279 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J061604 Promoter/Enhancer 1.3 Ensembl ENCODE CraniofacialAtlas dbSUPER 260.5 +0.5 497 3.3 IKZF1 ETS1 GABPA TAL1 FOSL1 JUND TCF12 TEAD4 POLR2A GLIS1 ENSG00000267279 RNF152 ENSG00000267316 lnc-CDH20-3 ENSG00000267175 CDH20
GH18J061608 Enhancer 0.3 ENCODE dbSUPER 250.7 -1.5 -1477 0.2 ENSG00000267279 HSALNG0121940 RNF152 ENSG00000267175 CDH20
GH18J061635 Enhancer 1 FANTOM5 Ensembl ENCODE 10.3 -30.3 -30269 3.4 CTCF TRIM22 RXRA SMC3 YY1 FOXA2 RAD21 ZFP37 JUND HNF4A RNF152 ENSG00000267279 ENSG00000267038 LSM6P1 ENSG00000267175 CDH20
GH18J061628 Enhancer 0.3 Ensembl 10 -21.1 -21095 1.8 EP300 RNF152 ENSG00000267279 LSM6P1 ENSG00000267038 ENSG00000267175 CDH20
GH18J061586 Enhancer 0.5 Ensembl 5.3 +18.5 18505 3.4 JUND ATF2 ATF4 JUN CEBPB HLF ATF7 ENSG00000267279 ENSG00000267316 lnc-CDH20-3 CDH20 RNF152
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000267279 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000267279 Gene

Latest Assembly
chr18:61,585,745-61,607,006
(GRCh38/hg38)
Size:
21,262 bases
Orientation:
Minus strand

Previous Assembly
chr18:59,252,979-59,274,149
(GRCh37/hg19 by Ensembl)
Size:
21,171 bases
Orientation:
Minus strand

Genomic View for ENSG00000267279 Gene

Genes around ENSG00000267279 on UCSC Golden Path with GeneCards custom track
ENSG00000267279 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000267279 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000267279 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000267279 Gene

Proteins for ENSG00000267279 Gene

Post-translational modifications for ENSG00000267279 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000267279 Gene

Domains & Families for ENSG00000267279 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000267279 Gene

Function for ENSG00000267279 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000267279 Gene

Localization for ENSG00000267279 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000267279 Gene

Pathways & Interactions for ENSG00000267279 Gene

PathCards logo

SuperPathways for ENSG00000267279 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000267279 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000267279 Gene

Drugs & Compounds for ENSG00000267279 Gene

No Compound Related Data Available

Transcripts for ENSG00000267279 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000267279 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00003C73BA_9606 lncRNA 655 4

Ensembl: ENST00000586949 (view in UCSC) ,

LncBook: HSALNT0252129,

LNCipedia: lnc-RNF152-2:7,

NONCODE: NONHSAT059606.2,

URS00002E03BC_9606 lncRNA 735 3

Ensembl: ENST00000587754 (view in UCSC) ,

LNCipedia: lnc-RNF152-2:8,

NONCODE: NONHSAT059602.2,

URS0000EF3D57_9606 lncRNA 875 1

Ensembl: ENST00000666670 (view in UCSC) ,

URS00008B5718_9606 lncRNA 340 3

LncBook: HSALNT0252127,

LNCipedia: lnc-RNF152-2:5,

NONCODE: NONHSAT059605.2,

URS00008B2BA1_9606 lncRNA 307 3

LncBook: HSALNT0252122,

LNCipedia: lnc-RNF152-2:4,

NONCODE: NONHSAT059601.2,

ENSG00000267279 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000267279 Gene

No ASD Table

Relevant External Links for ENSG00000267279 Gene

GeneLoc Exon Structure for
ENSG00000267279

No data available for mRNA/cDNA for ENSG00000267279 Gene

Expression for ENSG00000267279 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000267279 Gene

genes like me logo Genes that share expression patterns with ENSG00000267279: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000267279 Gene

Orthologs for ENSG00000267279 Gene

Evolution for ENSG00000267279 Gene

ENSEMBL:
Gene Tree for ENSG00000267279 (if available)
TreeFam:
Gene Tree for ENSG00000267279 (if available)

No data available for Orthologs for ENSG00000267279 Gene

Paralogs for ENSG00000267279 Gene

No data available for Paralogs for ENSG00000267279 Gene

Variants for ENSG00000267279 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000267279 Gene

Disorders for ENSG00000267279 Gene

Additional Disease Information for ENSG00000267279

Open Targets Platform
Open Targets Platform

No disorders were found for ENSG00000267279 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000267279 Gene

Publications for ENSG00000267279 Gene

No publications were found for ENSG00000267279 Gene.

No data available for Mastermind for ENSG00000267279 Gene

Products for ENSG00000267279 Gene

Sources for ENSG00000267279 Gene