Aliases for ENSG00000267159 Gene

Subcategory (RNA class) for ENSG00000267159 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000267159 Gene

  • Novel Transcript, Antisense To ARID3A 5
  • NONHSAG024323.2 91
  • HSALNG0122950 164
  • Lnc-R3HDM4-2 165
  • AC005379.1 5

External Ids for ENSG00000267159 Gene

Summaries for ENSG00000267159 Gene

GeneCards Summary for ENSG00000267159 Gene

ENSG00000267159 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000267159 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000267159 Gene

Genomics for ENSG00000267159 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000267159 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J000930 Enhancer 0.3 ENCODE 600.7 -1.8 -1790 0.2 ZNF121 ENSG00000267159 ENSG00000267666 ARID3A RF00017-2721 WDR18
GH19J000942 Promoter/Enhancer 2 FANTOM5 Ensembl ENCODE dbSUPER 6.4 -24.2 -24196 21.8 SP1 HNRNPL CREB1 GATAD2A CTCF TEAD4 PRDM10 TFE3 LEF1 SOX13 TMEM259 DAZAP1 PTBP1 LOC100288123 TCF3 ENSG00000267317 GRIN3B MIER2 RPS15 WDR18
GH19J000939 Promoter/Enhancer 1.3 Ensembl ENCODE dbSUPER 7.6 -11.6 -11594 2.9 HNRNPL POLR2A ZSCAN4 RBFOX2 SP1 ZNF600 ZFX ZNF140 CBX3 CTCF CIRBP TMEM259 GRIN3B SCAMP4 LOC100288123 ENSG00000267159 ARHGAP45 PALM RF00017-2721 ARID3A
GH19J000904 Enhancer 0.5 dbSUPER 5.4 +24.8 24822 0.6 ZBTB2 BCOR ZNF18 PRDM10 SMARCA5 CFD ELANE PRTN3 ENSG00000267159 MED16 R3HDM4 lnc-MED16-2 piR-56497-072 RNU6-9
GH19J000923 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.7 +3.1 3083 8.9 SP1 GATAD2A CTCF HNRNPL PRDM10 ZNF629 TFE3 KDM1A ZNF692 POLR2A ARID3A RF00017-2720 lnc-ARID3A-1 lnc-KISS1R-1 MED16 MIDN SBNO2 R3HDM4 ARHGAP45 KISS1R
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000267159 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000267159 Gene

Genomic Locations for ENSG00000267159 Gene
chr19:927,463-929,146
(GRCh38/hg38)
Size:
1,684 bases
Orientation:
Minus strand
chr19:928,257-928,817
(GRCh37/hg19)
Size:
561 bases
Orientation:
Minus strand

Genomic View for ENSG00000267159 Gene

Genes around ENSG00000267159 on UCSC Golden Path with GeneCards custom track
ENSG00000267159 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000267159 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000267159 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000267159 Gene

Proteins for ENSG00000267159 Gene

Post-translational modifications for ENSG00000267159 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000267159 Gene

Domains & Families for ENSG00000267159 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000267159 Gene

Function for ENSG00000267159 Gene

Phenotypes From GWAS Catalog for ENSG00000267159 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000267159 Gene

Localization for ENSG00000267159 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000267159 Gene

Pathways & Interactions for ENSG00000267159 Gene

PathCards logo

SuperPathways for ENSG00000267159 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000267159 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000267159 Gene

Drugs & Compounds for ENSG00000267159 Gene

No Compound Related Data Available

Transcripts for ENSG00000267159 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000267159 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000076B33D_9606 lncRNA 328 2

Ensembl: ENST00000585647 (view in UCSC) ,

LNCipedia: lnc-R3HDM4-2:3,

URS00001D0FAF_9606 lncRNA 330 3

LncBook: HSALNT0254137,

LNCipedia: lnc-R3HDM4-2:2,

NONCODE: NONHSAT060202.2,

URS00008B2727_9606 lncRNA 1519 2

LNCipedia: lnc-R3HDM4-2:1,

NONCODE: NONHSAT060201.2,

ENSG00000267159 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000267159 Gene

No ASD Table

Relevant External Links for ENSG00000267159 Gene

GeneLoc Exon Structure for
ENSG00000267159

No data available for mRNA/cDNA for ENSG00000267159 Gene

Expression for ENSG00000267159 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000267159 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000267159 Gene

This gene is overexpressed in Testis (x27.6) and Brain - Cerebellum (x6.0).
genes like me logo Genes that share expression patterns with ENSG00000267159: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000267159 Gene

Orthologs for ENSG00000267159 Gene

Evolution for ENSG00000267159 Gene

ENSEMBL:
Gene Tree for ENSG00000267159 (if available)
TreeFam:
Gene Tree for ENSG00000267159 (if available)

No data available for Orthologs for ENSG00000267159 Gene

Paralogs for ENSG00000267159 Gene

No data available for Paralogs for ENSG00000267159 Gene

Variants for ENSG00000267159 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000267159 Gene

Disorders for ENSG00000267159 Gene

Additional Disease Information for ENSG00000267159

No disorders were found for ENSG00000267159 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000267159 Gene

Publications for ENSG00000267159 Gene

No publications were found for ENSG00000267159 Gene.

No data available for Mastermind for ENSG00000267159 Gene

Products for ENSG00000267159 Gene

Sources for ENSG00000267159 Gene