Aliases for ENSG00000267054 Gene

Subcategory (RNA class) for ENSG00000267054 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000267054 Gene

  • Novel Transcript, Sense Intronic To LRP3 5
  • NONHSAG025480.2 91
  • HSALNG0125415 164
  • Lnc-WDR88-1 165
  • AC008738.1 5

External Ids for ENSG00000267054 Gene

Previous GeneCards Identifiers for ENSG00000267054 Gene

  • GC19P033668

Summaries for ENSG00000267054 Gene

GeneCards Summary for ENSG00000267054 Gene

ENSG00000267054 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000267054 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000267054 Gene

Genomics for ENSG00000267054 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000267054 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J033175 Promoter/Enhancer 2.2 FANTOM5 Ensembl ENCODE CraniofacialAtlas 600.7 -1.4 -1355 3.8 ZNF221 SP1 HNRNPL GATAD2A TEAD4 PRDM10 ZNF629 REST TFE3 RFX1 LRP3 ENSG00000267054 HSALNG0125414 TRT-AGT1-3 lnc-SLC7A10-1 GPATCH1 CEP89 ZNF507 LSM14A WDR88
GH19J033194 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 0.4 +16.8 16848 2.6 CREB1 GATAD2A PRDM10 ZNF629 ZNF692 PRDM1 ZIC2 RBFOX2 RXRB PATZ1 LRP3 GPATCH1 CEP89 WDR88 ENSG00000273420 ENSG00000267054 SLC7A10
GH19J033183 Enhancer 1 Ensembl ENCODE 0.4 +5.7 5717 1.5 CTCF PRDM10 ZNF629 IKZF1 KDM1A MTA2 ZNF143 ZNF24 PATZ1 REST WDR88 ENSG00000267054 LRP3 ENSG00000273420 SLC7A10
GH19J033190 Enhancer 0.3 Ensembl 0.4 +12.2 12245 0.2 ZBTB20 ENSG00000267054 LRP3 ENSG00000273420 SLC7A10
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000267054 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000267054 Gene

Genomic Locations for ENSG00000267054 Gene
chr19:33,178,056-33,178,651
(GRCh38/hg38)
Size:
596 bases
Orientation:
Plus strand
chr19:33,668,962-33,669,557
(GRCh37/hg19)
Size:
596 bases
Orientation:
Plus strand

Genomic View for ENSG00000267054 Gene

Genes around ENSG00000267054 on UCSC Golden Path with GeneCards custom track
ENSG00000267054 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000267054 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000267054 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000267054 Gene

Proteins for ENSG00000267054 Gene

Post-translational modifications for ENSG00000267054 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000267054 Gene

Domains & Families for ENSG00000267054 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000267054 Gene

Function for ENSG00000267054 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000267054 Gene

Localization for ENSG00000267054 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000267054 Gene

Pathways & Interactions for ENSG00000267054 Gene

PathCards logo

SuperPathways for ENSG00000267054 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000267054 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000267054 Gene

Drugs & Compounds for ENSG00000267054 Gene

No Compound Related Data Available

Transcripts for ENSG00000267054 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000267054 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00002544A3_9606 lncRNA 375 4

Ensembl: ENST00000590117 (view in UCSC) ,

LncBook: HSALNT0258538,

LNCipedia: lnc-WDR88-1:1,

NONCODE: NONHSAT064237.2,

ENSG00000267054 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000267054 Gene

No ASD Table

Relevant External Links for ENSG00000267054 Gene

GeneLoc Exon Structure for
ENSG00000267054

No data available for mRNA/cDNA for ENSG00000267054 Gene

Expression for ENSG00000267054 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000267054 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000267054 Gene

This gene is overexpressed in Brain - Cerebellar Hemisphere (x8.3), Brain - Cerebellum (x6.2), and Pituitary (x5.6).
genes like me logo Genes that share expression patterns with ENSG00000267054: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000267054 Gene

Orthologs for ENSG00000267054 Gene

Evolution for ENSG00000267054 Gene

ENSEMBL:
Gene Tree for ENSG00000267054 (if available)
TreeFam:
Gene Tree for ENSG00000267054 (if available)

No data available for Orthologs for ENSG00000267054 Gene

Paralogs for ENSG00000267054 Gene

No data available for Paralogs for ENSG00000267054 Gene

Variants for ENSG00000267054 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000267054 Gene

Disorders for ENSG00000267054 Gene

Additional Disease Information for ENSG00000267054

No disorders were found for ENSG00000267054 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000267054 Gene

Publications for ENSG00000267054 Gene

No publications were found for ENSG00000267054 Gene.

No data available for Mastermind for ENSG00000267054 Gene

Products for ENSG00000267054 Gene

Sources for ENSG00000267054 Gene