Aliases for ENSG00000266654 Gene

Subcategory (RNA class) for ENSG00000266654 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000266654 Gene

  • Novel Transcript, Antisense CCDC57 5
  • NONHSAG023069.2 91
  • HSALNG0119380 164
  • Lnc-SLC16A3-4 165
  • AC129510.2 5

External Ids for ENSG00000266654 Gene

Previous GeneCards Identifiers for ENSG00000266654 Gene

  • GC17P080117

Summaries for ENSG00000266654 Gene

GeneCards Summary for ENSG00000266654 Gene

ENSG00000266654 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000266654 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000266654 Gene

Genomics for ENSG00000266654 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000266654 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J082159 Enhancer 0.6 Ensembl ENCODE 600.7 +0.7 729 0.7 SCRT2 ZEB1 SCRT1 ENSG00000266654 CCDC57 piR-40441-006 FASN
GH17J082078 Enhancer 0.6 ENCODE 5.1 -81.5 -81545 0.2 RBFOX2 PATZ1 POLR2A ZKSCAN1 SMARCB1 RBM22 CTCF SMAD5 SUPT5H SIN3A ENSG00000266654 DUS1L SNORD134 FASN
GH17J082170 Enhancer 0.7 ENCODE 0.4 +11.2 11166 0.3 ZNF7 PKNOX1 HDAC1 USF2 CTBP1 HDAC2 MNT MYC EP400 BCOR CCDC57 piR-40441-006 ENSG00000266654 FASN
GH17J082173 Enhancer 0.3 ENCODE 0.4 +14.9 14902 1.1 NANOG POLR2A piR-40441-006 CCDC57 CSNK1D PDE6G TSPAN10 CCDC137 OXLD1 NPLOC4 MYADML2 PYCR1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000266654 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000266654 Gene

Genomic Locations for ENSG00000266654 Gene
chr17:82,159,515-82,160,452
(GRCh38/hg38)
Size:
938 bases
Orientation:
Plus strand
chr17:80,117,932-80,118,328
(GRCh37/hg19)
Size:
397 bases
Orientation:
Plus strand

Genomic View for ENSG00000266654 Gene

Genes around ENSG00000266654 on UCSC Golden Path with GeneCards custom track
ENSG00000266654 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000266654 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000266654 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000266654 Gene

Proteins for ENSG00000266654 Gene

Post-translational modifications for ENSG00000266654 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000266654 Gene

Domains & Families for ENSG00000266654 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000266654 Gene

Function for ENSG00000266654 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000266654 Gene

Localization for ENSG00000266654 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000266654 Gene

Pathways & Interactions for ENSG00000266654 Gene

PathCards logo

SuperPathways for ENSG00000266654 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000266654 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000266654 Gene

Drugs & Compounds for ENSG00000266654 Gene

No Compound Related Data Available

Transcripts for ENSG00000266654 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000266654 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000213D95_9606 lncRNA 345 4

Ensembl: ENST00000582774 (view in UCSC) ,

LncBook: HSALNT0246418,

LNCipedia: lnc-SLC16A3-4:1,

NONCODE: NONHSAT056647.2,

URS00009BC894_9606 lncRNA 281 2

LncBook: HSALNT0246416,

NONCODE: NONHSAT175772.1,

ENSG00000266654 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000266654 Gene

No ASD Table

Relevant External Links for ENSG00000266654 Gene

GeneLoc Exon Structure for
ENSG00000266654

No data available for mRNA/cDNA for ENSG00000266654 Gene

Expression for ENSG00000266654 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000266654 Gene

genes like me logo Genes that share expression patterns with ENSG00000266654: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000266654 Gene

Orthologs for ENSG00000266654 Gene

Evolution for ENSG00000266654 Gene

ENSEMBL:
Gene Tree for ENSG00000266654 (if available)
TreeFam:
Gene Tree for ENSG00000266654 (if available)

No data available for Orthologs for ENSG00000266654 Gene

Paralogs for ENSG00000266654 Gene

No data available for Paralogs for ENSG00000266654 Gene

Variants for ENSG00000266654 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000266654 Gene

Disorders for ENSG00000266654 Gene

Additional Disease Information for ENSG00000266654

No disorders were found for ENSG00000266654 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000266654 Gene

Publications for ENSG00000266654 Gene

No publications were found for ENSG00000266654 Gene.

No data available for Mastermind for ENSG00000266654 Gene

Products for ENSG00000266654 Gene

Sources for ENSG00000266654 Gene