Aliases for ENSG00000266378 Gene

Subcategory (RNA class) for ENSG00000266378 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for ENSG00000266378 Gene

  • Novel Transcript 5
  • NONHSAG020887.2 91
  • Lnc-COX10-4 165
  • AC005224.2 5

External Ids for ENSG00000266378 Gene

Previous GeneCards Identifiers for ENSG00000266378 Gene

  • GC17P014230

Summaries for ENSG00000266378 Gene

GeneCards Summary for ENSG00000266378 Gene

ENSG00000266378 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000266378 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000266378 Gene

Genomics for ENSG00000266378 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000266378 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J014208 Enhancer 1 Ensembl ENCODE 5.4 -117.9 -117900 1.8 CREB1 GATAD2A ATF7 TFE3 LEF1 NFKBIZ JUND SP1 DPF2 HDAC1 lnc-COX10-1 CDRT15 COX10 CDRT15P1 ENSG00000266378 HS3ST3B1 AB372671-002
GH17J014196 Enhancer 0.9 FANTOM5 ENCODE 5.1 -127.1 -127066 8.4 CTCF IKZF1 ZSCAN4 HDAC1 TCF7L2 CTBP1 ZNF444 NCOR1 ZFHX2 SPI1 CDRT15 COX10 CDRT15P1 ENSG00000266378 HS3ST3B1 lnc-COX10-1 AB372671-002
GH17J014156 Enhancer 0.7 Ensembl 5.5 -170.3 -170335 1.6 GATAD2A TFE3 CEBPA SOX13 FOXA2 MAFF FOXP1 SAP130 ZGPAT CEBPB COX10 CDRT15 CDRT15P1 ENSG00000266378 lnc-HS3ST3B1-10 piR-32325-060
GH17J014118 Enhancer 0.6 Ensembl 5.8 -205.5 -205534 6 RFX1 PRDM1 POLR2A PKNOX1 SCRT2 ARID3A RELB RUNX3 ZNF189 JUNB ENSG00000266378 CDRT15 lnc-HS3ST3B1-10 piR-50437-271 COX10
GH17J014205 Enhancer 0.7 ENCODE 4.9 -121.1 -121125 1.2 CREB1 FOXA1 SP1 HES1 RFX1 CTBP1 FOXA2 ZNF444 ATF3 YY1 CDRT15 COX10-AS1 ENSG00000266378 lnc-COX10-1 AB372671-002 COX10
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000266378 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000266378 Gene

Genomic Locations for ENSG00000266378 Gene
chr17:14,327,335-14,329,474
(GRCh38/hg38)
Size:
2,140 bases
Orientation:
Plus strand
chr17:14,230,652-14,232,791
(GRCh37/hg19)
Size:
2,140 bases
Orientation:
Plus strand

Genomic View for ENSG00000266378 Gene

Genes around ENSG00000266378 on UCSC Golden Path with GeneCards custom track
ENSG00000266378 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000266378 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000266378 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000266378 Gene

Proteins for ENSG00000266378 Gene

Post-translational modifications for ENSG00000266378 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000266378 Gene

Domains & Families for ENSG00000266378 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000266378 Gene

Function for ENSG00000266378 Gene

Phenotypes From GWAS Catalog for ENSG00000266378 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000266378 Gene

Localization for ENSG00000266378 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000266378 Gene

Pathways & Interactions for ENSG00000266378 Gene

PathCards logo

SuperPathways for ENSG00000266378 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000266378 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000266378 Gene

Drugs & Compounds for ENSG00000266378 Gene

No Compound Related Data Available

Transcripts for ENSG00000266378 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000266378 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00003B17C0_9606 lncRNA 2140 3

Ensembl: ENST00000584683 (view in UCSC) ,

LNCipedia: lnc-COX10-4:1,

NONCODE: NONHSAT145767.2,

ENSG00000266378 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000266378 Gene

No ASD Table

Relevant External Links for ENSG00000266378 Gene

GeneLoc Exon Structure for
ENSG00000266378

No data available for mRNA/cDNA for ENSG00000266378 Gene

Expression for ENSG00000266378 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000266378 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000266378 Gene

This gene is overexpressed in Whole Blood (x16.4), Liver (x9.3), and Spleen (x4.7).
genes like me logo Genes that share expression patterns with ENSG00000266378: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000266378 Gene

Orthologs for ENSG00000266378 Gene

Evolution for ENSG00000266378 Gene

ENSEMBL:
Gene Tree for ENSG00000266378 (if available)
TreeFam:
Gene Tree for ENSG00000266378 (if available)

No data available for Orthologs for ENSG00000266378 Gene

Paralogs for ENSG00000266378 Gene

No data available for Paralogs for ENSG00000266378 Gene

Variants for ENSG00000266378 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000266378 Gene

Disorders for ENSG00000266378 Gene

Additional Disease Information for ENSG00000266378

No disorders were found for ENSG00000266378 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000266378 Gene

Publications for ENSG00000266378 Gene

No publications were found for ENSG00000266378 Gene.

No data available for Mastermind for ENSG00000266378 Gene

Products for ENSG00000266378 Gene

Sources for ENSG00000266378 Gene