ENSG00000266248 Gene (RNA Gene)

 

GC19M029489
GIFtS:
6
See more...

Aliases for ENSG00000266248 Gene

Subcategory (RNA class) for ENSG00000266248 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000266248 Gene

  • Novel Transcript, Antisense To VSTM2B 5
  • NONHSAG025406.2 91
  • Lnc-C19orf12-3 165
  • HSALNG0125196 164
  • Lnc-UQCRFS1-1 165
  • AC011474.2 5

External Ids for ENSG00000266248 Gene

Previous GeneCards Identifiers for ENSG00000266248 Gene

  • GC19M029980

Summaries for ENSG00000266248 Gene

GeneCards Summary for ENSG00000266248 Gene

ENSG00000266248 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000266248 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000266248 Gene

Genomics for ENSG00000266248 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for ENSG00000266248 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH19J029527 Promoter/Enhancer 1 Ensembl dbSUPER 600.7 +1.0 1047 0.2 ZIC2 ZSCAN4 ZNF501 EZH2 ZNF341 SCRT2 ZBTB20 ZNF524 KLF7 ZBTB10 ENSG00000266248 LOC284395 VSTM2B lnc-C19orf12-12 POP4 lnc-VSTM2B-1
GH19J029525 Enhancer 0.9 ENCODE dbSUPER 600.7 +1.8 1799 0.2 PRDM10 ZNF692 EZH2 ZNF600 ZNF341 RBAK KLF9 ZBTB20 SP2 ZBTB10 ENSG00000266248 LOC284395 VSTM2B RPL9P32 ENSG00000279387 lnc-C19orf12-12 lnc-VSTM2B-1 UQCRFS1
GH19J029528 Promoter/Enhancer 1.7 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.7 -2.0 -2041 1.8 CTCF PRDM10 ZNF629 ZNF692 ZNF143 ZIC2 ZSCAN4 PATZ1 REST ZNF501 URI1 RPL9P32 ENSG00000266248 VSTM2B RF00951-063 POP4 lnc-C19orf12-12
GH19J029524 Enhancer 0.6 ENCODE dbSUPER 0.7 +2.6 2559 0.2 CTCF RAD21 ZNF335 EZH2 LOC284395 VSTM2B ENSG00000266248 ENSG00000279387 lnc-C19orf12-12 lnc-VSTM2B-1 UQCRFS1
GH19J029530 Enhancer 0.5 ENCODE dbSUPER 0.7 -3.4 -3411 0.2 EZH2 CTCF ENSG00000266248 VSTM2B RF00951-063 POP4 lnc-C19orf12-12
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000266248 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000266248 Gene

Genomic Locations for ENSG00000266248 Gene
chr19:29,489,775-29,526,948
(GRCh38/hg38)
Size:
37,174 bases
Orientation:
Minus strand
chr19:29,980,682-30,017,855
(GRCh37/hg19)
Size:
37,174 bases
Orientation:
Minus strand

Genomic View for ENSG00000266248 Gene

Genes around ENSG00000266248 on UCSC Golden Path with GeneCards custom track
ENSG00000266248 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000266248 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000266248 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

No data available for RefSeq DNA sequence for ENSG00000266248 Gene

Proteins for ENSG00000266248 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for ENSG00000266248 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000266248 Gene

Domains & Families for ENSG00000266248 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000266248 Gene

Function for ENSG00000266248 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for ENSG00000266248 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000266248 Gene

Localization for ENSG00000266248 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000266248 Gene

Pathways & Interactions for ENSG00000266248 Gene

PathCards logo

SuperPathways for ENSG00000266248 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000266248 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000266248 Gene

Drugs & Compounds for ENSG00000266248 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for ENSG00000266248 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000266248 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000548A0F_9606 lncRNA 543 4

Ensembl: ENST00000579268 (view in UCSC) ,

LncBook: HSALNT0258101,

LNCipedia: lnc-C19orf12-3:1,

NONCODE: NONHSAT064103.2,

URS00009BD8E6_9606 lncRNA 2999 2

LncBook: HSALNT0258092,

NONCODE: NONHSAT180295.1,

URS00008B768F_9606 lncRNA 1127 2

LNCipedia: lnc-UQCRFS1-1:3,

NONCODE: NONHSAT064100.2,

ENSG00000266248 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000266248 Gene

No ASD Table

Relevant External Links for ENSG00000266248 Gene

GeneLoc Exon Structure for
ENSG00000266248

No data available for mRNA/cDNA for ENSG00000266248 Gene

Expression for ENSG00000266248 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000266248 Gene

mRNA expression in normal human tissues for ENSG00000266248 Gene
mRNA expression by GTEx for ENSG00000266248 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000266248 Gene

This gene is overexpressed in Brain - Nucleus accumbens (basal ganglia) (x8.5), Brain - Cerebellum (x5.8), Brain - Cerebellar Hemisphere (x4.7), Brain - Cortex (x4.4), and Brain - Caudate (basal ganglia) (x4.3).
genes like me logo Genes that share expression patterns with ENSG00000266248: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000266248 Gene

Orthologs for ENSG00000266248 Gene

Evolution for ENSG00000266248 Gene

ENSEMBL:
Gene Tree for ENSG00000266248 (if available)
TreeFam:
Gene Tree for ENSG00000266248 (if available)

No data available for Orthologs for ENSG00000266248 Gene

Paralogs for ENSG00000266248 Gene

No data available for Paralogs for ENSG00000266248 Gene

Variants for ENSG00000266248 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000266248 Gene

Disorders for ENSG00000266248 Gene

No disorders were found for ENSG00000266248 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000266248 Gene

Publications for ENSG00000266248 Gene

No publications were found for ENSG00000266248 Gene.

No data available for Mastermind for ENSG00000266248 Gene

Products for ENSG00000266248 Gene

Sources for ENSG00000266248 Gene