Aliases for ENSG00000263489 Gene

Data sources for ENSG00000263489 Gene:

RNA type for ENSG00000263489 Gene

lncRNA

Aliases for ENSG00000263489 Gene

External Ids for ENSG00000263489 Gene

Previous GeneCards Identifiers for ENSG00000263489 Gene

  • GC17M062050

Summaries for ENSG00000263489 Gene

GeneCards Summary for ENSG00000263489 Gene

ENSG00000263489 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000263489 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000263489 Gene

Genomics for ENSG00000263489 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000263489 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J063987 Promoter/Enhancer 1.5 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 250.7 +0.6 603 2 ZNF512B SCN4A ENSG00000263489 CD79B GH1 CSHL1 HSALNG0118058 PRR29
GH17J063990 Promoter/Enhancer 1.3 Ensembl ENCODE dbSUPER 250.7 -1.5 -1499 1.8 CTCF REST TRIM22 ZBTB7B SIN3A ZNF217 KLF9 RAD21 SMC3 MLLT1 ENSG00000263489 CD79B GH1 CSHL1 PRR29 SCN4A
GH17J063991 Enhancer 0.7 ENCODE dbSUPER 250.7 -0.6 -599 0 ZBTB7B KLF9 ZNF512B RFX1 ZSCAN4 ZNF687 SUZ12 EGR2 MTA3 ZFHX2 ENSG00000263489 CD79B GH1 CSHL1 PRR29 SCN4A
GH17J063997 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 -8.9 -8904 2.6 ZIC2 MXD4 SIN3A SIX4 ZNF341 MNT ZBTB7B ZNF217 THAP11 MBD2 PRR29 PRR29-AS1 CEP95 ENSG00000265982 KPNA2P3 ENSG00000265218 PLEKHM1P1 ENSG00000265298 POLG2 DDX5
GH17J063982 Enhancer 1 ENCODE dbSUPER 0.7 +4.8 4836 3.3 JUND ZBTB10 BHLHE40 ZNF148 MCM3 ZBTB7B HES1 GABPA FOXA2 CTBP1 FTSJ3 CEP95 POLG2 DDX42 DDX5 ENSG00000265982 PLEKHM1P1 MAP3K3 ARHGAP27P1-BPTFP1-KPNA2P3 CD79B
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000263489 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000263489 Gene

Latest Assembly
chr17:63,972,919-63,989,422
(GRCh38/hg38)
Size:
16,504 bases
Orientation:
Minus strand

Previous Assembly
chr17:62,050,280-62,066,782
(GRCh37/hg19 by Ensembl)
Size:
16,503 bases
Orientation:
Minus strand

Genomic View for ENSG00000263489 Gene

Genes around ENSG00000263489 on UCSC Golden Path with GeneCards custom track
ENSG00000263489 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000263489 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000263489 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000263489 Gene

Proteins for ENSG00000263489 Gene

Post-translational modifications for ENSG00000263489 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000263489 Gene

Domains & Families for ENSG00000263489 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000263489 Gene

Function for ENSG00000263489 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000263489 Gene

Localization for ENSG00000263489 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000263489 Gene

Pathways & Interactions for ENSG00000263489 Gene

PathCards logo

SuperPathways for ENSG00000263489 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000263489 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000263489 Gene

Drugs & Compounds for ENSG00000263489 Gene

No Compound Related Data Available

Transcripts for ENSG00000263489 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000263489 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS000024EB5A_9606 lncRNA 502 4

Ensembl: ENST00000577329 (view in UCSC) ,

LncBook: HSALNT0243746,

LNCipedia: lnc-SCN4A-1:1,

NONCODE: NONHSAT055252.2,

URS0000D57CDD_9606 lncRNA 504 1

LNCipedia: lnc-SCN4A-1:2,

URS0001BE45B1_9606 lncRNA 502 1

LncBook: HSALNT0243746,

ENSG00000263489 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000263489 Gene

No ASD Table

Relevant External Links for ENSG00000263489 Gene

GeneLoc Exon Structure for
ENSG00000263489

No data available for mRNA/cDNA for ENSG00000263489 Gene

Expression for ENSG00000263489 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000263489 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000263489 Gene

This gene is overexpressed in Muscle - Skeletal (x46.8).
genes like me logo Genes that share expression patterns with ENSG00000263489: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000263489 Gene

Orthologs for ENSG00000263489 Gene

Evolution for ENSG00000263489 Gene

ENSEMBL:
Gene Tree for ENSG00000263489 (if available)
TreeFam:
Gene Tree for ENSG00000263489 (if available)

No data available for Orthologs for ENSG00000263489 Gene

Paralogs for ENSG00000263489 Gene

No data available for Paralogs for ENSG00000263489 Gene

Variants for ENSG00000263489 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000263489 Gene

Disorders for ENSG00000263489 Gene

No disorders were found for ENSG00000263489 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000263489 Gene

Publications for ENSG00000263489 Gene

No publications were found for ENSG00000263489 Gene.

No data available for Mastermind for ENSG00000263489 Gene

Products for ENSG00000263489 Gene

Sources for ENSG00000263489 Gene