Aliases for ENSG00000262801 Gene

Subcategory (RNA class) for ENSG00000262801 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000262801 Gene

  • Novel Transcript 5
  • NONHSAG018649.2 91
  • HSALNG0109671 164
  • Lnc-SHISA9-3 165
  • U91319.1 5

External Ids for ENSG00000262801 Gene

Summaries for ENSG00000262801 Gene

GeneCards Summary for ENSG00000262801 Gene

ENSG00000262801 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000262801 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000262801 Gene

Genomics for ENSG00000262801 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000262801 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J012873 Enhancer 0.4 Ensembl 4.5 -371.9 -371931 1.4 SP1 FOSL2 JUN ENSG00000199474 SHISA9 ENSG00000262801 RPL35AP34 CPPED1
GH16J013269 Enhancer 0.9 ENCODE 0.4 +23.8 23827 0.2 GATAD2A REST TFE3 SOX13 RCOR2 RXRB IRF2 SP1 GABPA CEBPA ENSG00000262801 LOC107984137 ENSG00000262011 SHISA9 ERCC4
GH16J013305 Enhancer 0.8 Ensembl ENCODE 0.2 +60.9 60916 3.9 IKZF2 EED MNT PAX8 RELB RUNX3 ARNT IKZF1 BATF EBF1 ENSG00000262011 ENSG00000262801 LOC107984137 SHISA9 ERCC4
GH16J013298 Enhancer 0.5 Ensembl ENCODE 0.2 +52.7 52669 0.6 IKZF1 BHLHE40 ENSG00000262011 ENSG00000262801 LOC107984137 SHISA9 ERCC4
GH16J013389 Enhancer 1 Ensembl ENCODE 0.1 +144.3 144334 2 SP1 RELA SMAD5 TCF12 IKZF2 TRIM22 PKNOX1 YBX1 SIN3A ARID3A piR-46501-039 piR-61101-232 ENSG00000262801 SHISA9 ERCC4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000262801 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000262801 Gene

Genomic Locations for ENSG00000262801 Gene
chr16:13,246,232-13,563,388
(GRCh38/hg38)
Size:
317,157 bases
Orientation:
Plus strand
chr16:13,340,173-13,656,775
(GRCh37/hg19)
Size:
316,603 bases
Orientation:
Plus strand

Genomic View for ENSG00000262801 Gene

Genes around ENSG00000262801 on UCSC Golden Path with GeneCards custom track
ENSG00000262801 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000262801 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000262801 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000262801 Gene

Proteins for ENSG00000262801 Gene

Post-translational modifications for ENSG00000262801 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000262801 Gene

Domains & Families for ENSG00000262801 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000262801 Gene

Function for ENSG00000262801 Gene

Phenotypes From GWAS Catalog for ENSG00000262801 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000262801 Gene

Localization for ENSG00000262801 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000262801 Gene

Pathways & Interactions for ENSG00000262801 Gene

PathCards logo

SuperPathways for ENSG00000262801 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000262801 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000262801 Gene

Drugs & Compounds for ENSG00000262801 Gene

No Compound Related Data Available

Transcripts for ENSG00000262801 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000262801 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000030BD8B_9606 lncRNA 764 3

Ensembl: ENST00000571619 (view in UCSC) ,

LNCipedia: lnc-SHISA9-3:1,

NONCODE: NONHSAT140640.2,

URS0000EF6948_9606 lncRNA 1232 1

Ensembl: ENST00000662907 (view in UCSC) ,

URS0000EF6781_9606 lncRNA 1215 1

Ensembl: ENST00000655174 (view in UCSC) ,

URS0000EF4796_9606 lncRNA 1084 1

Ensembl: ENST00000665873 (view in UCSC) ,

URS0000EEFA20_9606 lncRNA 1032 1

Ensembl: ENST00000574540 (view in UCSC) ,

ENSG00000262801 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000262801 Gene

No ASD Table

Relevant External Links for ENSG00000262801 Gene

GeneLoc Exon Structure for
ENSG00000262801

No data available for mRNA/cDNA for ENSG00000262801 Gene

Expression for ENSG00000262801 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000262801 Gene

genes like me logo Genes that share expression patterns with ENSG00000262801: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000262801 Gene

Orthologs for ENSG00000262801 Gene

Evolution for ENSG00000262801 Gene

ENSEMBL:
Gene Tree for ENSG00000262801 (if available)
TreeFam:
Gene Tree for ENSG00000262801 (if available)

No data available for Orthologs for ENSG00000262801 Gene

Paralogs for ENSG00000262801 Gene

No data available for Paralogs for ENSG00000262801 Gene

Variants for ENSG00000262801 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000262801 Gene

Disorders for ENSG00000262801 Gene

Additional Disease Information for ENSG00000262801

No disorders were found for ENSG00000262801 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000262801 Gene

Publications for ENSG00000262801 Gene

No publications were found for ENSG00000262801 Gene.

No data available for Mastermind for ENSG00000262801 Gene

Products for ENSG00000262801 Gene

Sources for ENSG00000262801 Gene