Aliases for ENSG00000262580 Gene

Data sources for ENSG00000262580 Gene:

RNA type for ENSG00000262580 Gene

lncRNA

Aliases for ENSG00000262580 Gene

External Ids for ENSG00000262580 Gene

Previous GeneCards Identifiers for ENSG00000262580 Gene

  • GC17M078174

Summaries for ENSG00000262580 Gene

GeneCards Summary for ENSG00000262580 Gene

ENSG00000262580 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000262580 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000262580 Gene

Genomics for ENSG00000262580 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000262580 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J080206 Promoter 0.4 Ensembl 291.9 -0.8 -772 0.6 KDM1A ENSG00000262580 MK280252 EIF4A3 NONHSAG022947.2 lnc-SGSH-2 SGSH SLC26A11 CARD14
GH17J080207 Promoter 0.4 Ensembl 250.7 -1.4 -1372 0.2 KDM1A ENSG00000262580 NONHSAG022947.2 SGSH EIF4A3 lnc-SGSH-2 SLC26A11 CARD14
GH17J080218 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas 24.5 -14.2 -14212 4.5 MYC NCOR1 ZNF600 ZNF10 NFIC ZIC2 ZBTB10 MXD4 BCL11A HES1 SLC26A11 SGSH lnc-EIF4A3-2 ENSG00000262580 CARD14 CBX8
GH17J080252 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 11.9 -53.4 -53370 14.2 BCLAF1 SP1 ZNF207 ZNF600 MYC NCOR1 IKZF1 SSRP1 JUND ZNF592 RNF213 piR-38716-064 lnc-SGSH-3 EIF4A3 CEP131 TEPSIN ENSG00000262580 CARD14 ENSG00000260005 RPL12P37
GH17J079984 Promoter/Enhancer 2 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 5.5 +216.3 216272 11.1 ZNF654 MYC ZNF600 IKZF1 SSRP1 ZNF580 ZMYM3 ATF2 KLF9 CEBPA EIF4A3 CCDC40 ENGASE CBX2 TBC1D16 RNF213-AS1 ENDOV SGSH CANT1 ENSG00000262580
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000262580 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000262580 Gene

Latest Assembly
chr17:80,200,229-80,206,329
(GRCh38/hg38)
Size:
6,101 bases
Orientation:
Minus strand

Previous Assembly
chr17:78,174,472-78,179,748
(GRCh37/hg19 by Ensembl)
Size:
5,277 bases
Orientation:
Minus strand

Genomic View for ENSG00000262580 Gene

Genes around ENSG00000262580 on UCSC Golden Path with GeneCards custom track
ENSG00000262580 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000262580 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000262580 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000262580 Gene

Proteins for ENSG00000262580 Gene

Post-translational modifications for ENSG00000262580 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000262580 Gene

Domains & Families for ENSG00000262580 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000262580 Gene

Function for ENSG00000262580 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000262580 Gene

Localization for ENSG00000262580 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000262580 Gene

Pathways & Interactions for ENSG00000262580 Gene

PathCards logo

SuperPathways for ENSG00000262580 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000262580 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000262580 Gene

Drugs & Compounds for ENSG00000262580 Gene

No Compound Related Data Available

Transcripts for ENSG00000262580 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000262580 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00002543DC_9606 lncRNA 650 4

Ensembl: ENST00000573935 (view in UCSC) ,

LncBook: HSALNT0246067,

LNCipedia: lnc-SGSH-1:5,

NONCODE: NONHSAT056357.2,

URS000024CE86_9606 lncRNA 4399 3

Ensembl: ENST00000570309 (view in UCSC) ,

LNCipedia: lnc-SGSH-1:4,

NONCODE: NONHSAT056351.2,

URS0000615B48_9606 lncRNA 820 3

Ensembl: ENST00000576824 (view in UCSC) ,

LNCipedia: lnc-SGSH-1:2,

NONCODE: NONHSAT056356.2,

URS00002A397F_9606 lncRNA 806 3

Ensembl: ENST00000573346 (view in UCSC) ,

LNCipedia: lnc-SGSH-1:3,

NONCODE: NONHSAT056355.2,

URS00004E53FE_9606 lncRNA 750 2

Ensembl: ENST00000572730 (view in UCSC) ,

LNCipedia: lnc-SGSH-1:1,

ENSG00000262580 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000262580 Gene

No ASD Table

Relevant External Links for ENSG00000262580 Gene

GeneLoc Exon Structure for
ENSG00000262580

No data available for mRNA/cDNA for ENSG00000262580 Gene

Expression for ENSG00000262580 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000262580 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000262580 Gene

This gene is overexpressed in Spleen (x4.5).
genes like me logo Genes that share expression patterns with ENSG00000262580: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000262580 Gene

Orthologs for ENSG00000262580 Gene

Evolution for ENSG00000262580 Gene

ENSEMBL:
Gene Tree for ENSG00000262580 (if available)
TreeFam:
Gene Tree for ENSG00000262580 (if available)

No data available for Orthologs for ENSG00000262580 Gene

Paralogs for ENSG00000262580 Gene

No data available for Paralogs for ENSG00000262580 Gene

Variants for ENSG00000262580 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000262580 Gene

Disorders for ENSG00000262580 Gene

Additional Disease Information for ENSG00000262580

Open Targets Platform
Open Targets Platform

No disorders were found for ENSG00000262580 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000262580 Gene

Publications for ENSG00000262580 Gene

No publications were found for ENSG00000262580 Gene.

No data available for Mastermind for ENSG00000262580 Gene

Products for ENSG00000262580 Gene

Sources for ENSG00000262580 Gene