Aliases for ENSG00000262420 Gene

Subcategory (RNA class) for ENSG00000262420 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for ENSG00000262420 Gene

  • Novel Transcript, Antisense To TXNDC11 5
  • NONHSAG018613.2 91
  • AC007613.1 5
  • Lnc-SNN-1 165

External Ids for ENSG00000262420 Gene

Previous GeneCards Identifiers for ENSG00000262420 Gene

  • GC16P011836

Summaries for ENSG00000262420 Gene

GeneCards Summary for ENSG00000262420 Gene

ENSG00000262420 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000262420 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000262420 Gene

Genomics for ENSG00000262420 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000262420 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J011740 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 600.7 +0.6 585 5.4 CEBPG SP1 HNRNPL CREB1 GATAD2A PRDM10 ZNF629 TFE3 SOX13 IKZF1 TXNDC11 ENSG00000262420 lnc-SNN-1 NPIPB2 RSL1D1 LOC105371083 SNN
GH16J011746 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 +6.1 6100 2.9 GATAD2A REST TFE3 RCOR2 ZNF7 PRDM1 SP1 GABPA CEBPA SOX13 HNRNPCP4 ENSG00000261560 TXNDC11 SOCS1 ENSG00000263307 NPIPB2 lnc-SNN-1 ENSG00000274505 ENSG00000262420 ZC3H7A
GH16J011739 Promoter/Enhancer 0.8 Ensembl dbSUPER 0.7 -2.6 -2609 0.2 ZNF316 JUNB BATF TBP RSL1D1 ENSG00000262420 TXNDC11 piR-32214-236 SNN
GH16J011737 Promoter/Enhancer 1.1 Ensembl dbSUPER 0.4 -7.8 -7809 0.2 LEF1 IKZF1 JUND PKNOX1 TCF12 HDAC1 SOX6 FOXJ2 EP300 ARID3A RSL1D1 ENSG00000262420 TXNDC11 piR-32214-236 SNN
GH16J011736 Enhancer 0.7 ENCODE dbSUPER 0.7 -5.0 -4990 0.2 ZNF629 PRDM1 RBAK ZXDB TSHZ1 OSR2 HIC1 ZNF843 FEZF1 PAF1 ENSG00000261560 RSL1D1 HNRNPCP4 ENSG00000262420 TXNDC11 piR-32214-236 SNN
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000262420 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000262420 Gene

Genomic Locations for ENSG00000262420 Gene
chr16:11,741,910-11,749,920
(GRCh38/hg38)
Size:
8,011 bases
Orientation:
Plus strand
chr16:11,835,766-11,838,362
(GRCh37/hg19)
Size:
2,597 bases
Orientation:
Plus strand

Genomic View for ENSG00000262420 Gene

Genes around ENSG00000262420 on UCSC Golden Path with GeneCards custom track
ENSG00000262420 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000262420 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000262420 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000262420 Gene

Proteins for ENSG00000262420 Gene

Post-translational modifications for ENSG00000262420 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000262420 Gene

Domains & Families for ENSG00000262420 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000262420 Gene

Function for ENSG00000262420 Gene

Phenotypes From GWAS Catalog for ENSG00000262420 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000262420 Gene

Localization for ENSG00000262420 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000262420 Gene

Pathways & Interactions for ENSG00000262420 Gene

PathCards logo

SuperPathways for ENSG00000262420 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000262420 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000262420 Gene

Drugs & Compounds for ENSG00000262420 Gene

No Compound Related Data Available

Transcripts for ENSG00000262420 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000262420 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000159F16_9606 lncRNA 2597 2

Ensembl: ENST00000572811 (view in UCSC) ,

NONCODE: NONHSAT140583.2,

URS0000D5735C_9606 lncRNA 6198 1

LNCipedia: lnc-SNN-1:5,

URS0000D5D768_9606 lncRNA 638 1

LNCipedia: lnc-SNN-1:3,

ENSG00000262420 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000262420 Gene

No ASD Table

Relevant External Links for ENSG00000262420 Gene

GeneLoc Exon Structure for
ENSG00000262420

No data available for mRNA/cDNA for ENSG00000262420 Gene

Expression for ENSG00000262420 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000262420 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000262420 Gene

This gene is overexpressed in Muscle - Skeletal (x4.3).
genes like me logo Genes that share expression patterns with ENSG00000262420: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000262420 Gene

Orthologs for ENSG00000262420 Gene

Evolution for ENSG00000262420 Gene

ENSEMBL:
Gene Tree for ENSG00000262420 (if available)
TreeFam:
Gene Tree for ENSG00000262420 (if available)

No data available for Orthologs for ENSG00000262420 Gene

Paralogs for ENSG00000262420 Gene

No data available for Paralogs for ENSG00000262420 Gene

Variants for ENSG00000262420 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000262420 Gene

Disorders for ENSG00000262420 Gene

Additional Disease Information for ENSG00000262420

No disorders were found for ENSG00000262420 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000262420 Gene

Publications for ENSG00000262420 Gene

No publications were found for ENSG00000262420 Gene.

No data available for Mastermind for ENSG00000262420 Gene

Products for ENSG00000262420 Gene

Sources for ENSG00000262420 Gene