Aliases for ENSG00000262343 Gene

Data sources for ENSG00000262343 Gene:

RNA type for ENSG00000262343 Gene

lncRNA

Aliases for ENSG00000262343 Gene

External Ids for ENSG00000262343 Gene

Previous GeneCards Identifiers for ENSG00000262343 Gene

  • GC17M077821

Summaries for ENSG00000262343 Gene

GeneCards Summary for ENSG00000262343 Gene

ENSG00000262343 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000262343 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000262343 Gene

Genomics for ENSG00000262343 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000262343 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J079849 Enhancer 1 ENCODE dbSUPER 250.7 +1.2 1202 2.6 JUND NFIC ZIC2 MXD4 CEBPB BHLHE40 ZFP64 MAX ZNF217 RAD51 ENSG00000262343 CBX8 RF00017-2324 CBX4 TBC1D16
GH17J079852 Promoter/Enhancer 1 Ensembl ENCODE dbSUPER 250.7 -1.0 -1011 1 IRF2 KAT7 NFE2 IKZF1 ZNF335 ENSG00000262343 HSALNG0119143 CBX4 TBC1D16
GH17J079835 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 +10.7 10733 11.5 BCLAF1 ZNF207 ZNF600 NCOR1 MYC IKZF1 ZNF592 ATF2 CEBPA ZNF223 CBX4 HSALNG0119139 USP36 EIF4A3 CCDC40 RNF213-AS1 ENGASE ENDOV CBX8 HSALNG0119137
GH17J079855 Enhancer 0.6 Ensembl 0.7 -3.5 -3498 0.2 MXD4 HOMEZ ZNF205 TFAP4 ELF3 RXRB ARID4B KDM3A PPARG NFIL3 ENSG00000262343 HSALNG0119143 CBX4 TBC1D16
GH17J079856 Enhancer 0.5 Ensembl 0.7 -3.9 -3898 0.2 MXD4 SAP130 ZNF205 ELF3 RXRB ARID4B KDM3A PPARG HNRNPL ENSG00000262343 HSALNG0119143 CBX4 TBC1D16
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000262343 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000262343 Gene

Latest Assembly
chr17:79,847,019-79,852,003
(GRCh38/hg38)
Size:
4,985 bases
Orientation:
Minus strand

Previous Assembly
chr17:77,821,857-77,823,909
(GRCh37/hg19 by Ensembl)
Size:
2,053 bases
Orientation:
Minus strand

Genomic View for ENSG00000262343 Gene

Genes around ENSG00000262343 on UCSC Golden Path with GeneCards custom track
ENSG00000262343 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000262343 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000262343 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000262343 Gene

Proteins for ENSG00000262343 Gene

Post-translational modifications for ENSG00000262343 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000262343 Gene

Domains & Families for ENSG00000262343 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000262343 Gene

Function for ENSG00000262343 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000262343 Gene

Localization for ENSG00000262343 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000262343 Gene

Pathways & Interactions for ENSG00000262343 Gene

PathCards logo

SuperPathways for ENSG00000262343 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000262343 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000262343 Gene

Drugs & Compounds for ENSG00000262343 Gene

No Compound Related Data Available

Transcripts for ENSG00000262343 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000262343 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS000048D4CA_9606 lncRNA 324 3

Ensembl: ENST00000570408 (view in UCSC) ,

LNCipedia: lnc-CBX4-1:1,

NONCODE: NONHSAT056319.2,

URS0001BDC67D_9606 lncRNA 1426 1

LncBook: HSALNT0246007,

ENSG00000262343 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000262343 Gene

No ASD Table

Relevant External Links for ENSG00000262343 Gene

GeneLoc Exon Structure for
ENSG00000262343

No data available for mRNA/cDNA for ENSG00000262343 Gene

Expression for ENSG00000262343 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000262343 Gene

genes like me logo Genes that share expression patterns with ENSG00000262343: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000262343 Gene

Orthologs for ENSG00000262343 Gene

Evolution for ENSG00000262343 Gene

ENSEMBL:
Gene Tree for ENSG00000262343 (if available)
TreeFam:
Gene Tree for ENSG00000262343 (if available)

No data available for Orthologs for ENSG00000262343 Gene

Paralogs for ENSG00000262343 Gene

No data available for Paralogs for ENSG00000262343 Gene

Variants for ENSG00000262343 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000262343 Gene

Disorders for ENSG00000262343 Gene

No disorders were found for ENSG00000262343 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000262343 Gene

Publications for ENSG00000262343 Gene

No publications were found for ENSG00000262343 Gene.

No data available for Mastermind for ENSG00000262343 Gene

Products for ENSG00000262343 Gene

Sources for ENSG00000262343 Gene