Aliases for ENSG00000262198 Gene

Subcategory (RNA class) for ENSG00000262198 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000262198 Gene

  • Novel Transcript 5
  • NONHSAG012986.2 91
  • HSALNG0095697 164
  • HSALNG0095695 164
  • AL157931.1 5
  • Lnc-SGCG-6 165

External Ids for ENSG00000262198 Gene

Previous GeneCards Identifiers for ENSG00000262198 Gene

  • GC13P023492
  • GC13P022918

Summaries for ENSG00000262198 Gene

GeneCards Summary for ENSG00000262198 Gene

ENSG00000262198 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000262198 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000262198 Gene

Genomics for ENSG00000262198 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000262198 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH13J022884 Enhancer 0.4 FANTOM5 600.7 +0.6 585 0.2 ZBTB40 MLLT1 ENSG00000262198 NONHSAG012986.2 LOC105370109 piR-45332-009 LINC00621 SGCG
GH13J022880 Enhancer 0.8 Ensembl ENCODE 0.7 -2.2 -2207 5.2 POLR2A ARID3A GATAD2B ZBTB40 ZNF592 ELF1 HDGF ZNF207 SPI1 MTA2 LOC105370109 RPL7AP73 ENSG00000253094 BASP1P1 ENSG00000262198 NONHSAG012986.2 piR-50308-131 LINC00621 SGCG
GH13J022914 Promoter/Enhancer 1.6 Ensembl ENCODE CraniofacialAtlas 0.3 +31.9 31882 2.6 CTCF PRDM10 ZNF692 ZHX2 LARP7 ZNF143 ZIC2 PATZ1 POLR2A ZNF501 LINC00621 NUS1P2 ENSG00000262198 SGCG
GH13J022893 Enhancer 0.3 Ensembl 0.4 +9.9 9881 1 SPI1 ZNF680 BASP1P1 LINC00621-001 ENSG00000262198 piR-31225-006 LOC105370109 LINC00621 SGCG
GH13J022887 Enhancer 0.2 Ensembl 0.7 +3.1 3082 0.2 piR-31225-006 piR-45332-009 ENSG00000262198 NONHSAG012986.2 LOC105370109 LINC00621 SGCG
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000262198 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000262198 Gene

Genomic Locations for ENSG00000262198 Gene
chr13:22,884,019-22,924,602
(GRCh38/hg38)
Size:
40,584 bases
Orientation:
Plus strand
chr13:23,492,730-23,498,741
(GRCh37/hg19)
Size:
6,012 bases
Orientation:
Plus strand

Genomic View for ENSG00000262198 Gene

Genes around ENSG00000262198 on UCSC Golden Path with GeneCards custom track
ENSG00000262198 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000262198 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000262198 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000262198 Gene

Proteins for ENSG00000262198 Gene

Post-translational modifications for ENSG00000262198 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000262198 Gene

Domains & Families for ENSG00000262198 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000262198 Gene

Function for ENSG00000262198 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000262198 Gene

Localization for ENSG00000262198 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000262198 Gene

Pathways & Interactions for ENSG00000262198 Gene

PathCards logo

SuperPathways for ENSG00000262198 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000262198 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000262198 Gene

Drugs & Compounds for ENSG00000262198 Gene

No Compound Related Data Available

Transcripts for ENSG00000262198 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000262198 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00005F0EC7_9606 lncRNA 585 4

Ensembl: ENST00000575845 (view in UCSC) ,

LncBook: HSALNT0198477,

LNCipedia: lnc-SGCG-6:2,

NONCODE: NONHSAT032438.2,

URS00008C1726_9606 lncRNA 2769 2

LNCipedia: lnc-SGCG-6:1,

NONCODE: NONHSAT032437.2,

URS00009B7884_9606 lncRNA 630 2

LncBook: HSALNT0198473,

NONCODE: NONHSAT165349.1,

URS0000D5807D_9606 lncRNA 3556 1

LNCipedia: lnc-SGCG-6:3,

ENSG00000262198 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000262198 Gene

No ASD Table

Relevant External Links for ENSG00000262198 Gene

GeneLoc Exon Structure for
ENSG00000262198

No data available for mRNA/cDNA for ENSG00000262198 Gene

Expression for ENSG00000262198 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000262198 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000262198 Gene

This gene is overexpressed in Cervix - Endocervix (x42.6) and Kidney - Cortex (x4.8).
genes like me logo Genes that share expression patterns with ENSG00000262198: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000262198 Gene

Orthologs for ENSG00000262198 Gene

Evolution for ENSG00000262198 Gene

ENSEMBL:
Gene Tree for ENSG00000262198 (if available)
TreeFam:
Gene Tree for ENSG00000262198 (if available)

No data available for Orthologs for ENSG00000262198 Gene

Paralogs for ENSG00000262198 Gene

No data available for Paralogs for ENSG00000262198 Gene

Variants for ENSG00000262198 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000262198 Gene

Disorders for ENSG00000262198 Gene

Additional Disease Information for ENSG00000262198

No disorders were found for ENSG00000262198 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000262198 Gene

Publications for ENSG00000262198 Gene

No publications were found for ENSG00000262198 Gene.

No data available for Mastermind for ENSG00000262198 Gene

Products for ENSG00000262198 Gene

Sources for ENSG00000262198 Gene