Aliases for ENSG00000262172 Gene

Subcategory (RNA class) for ENSG00000262172 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000262172 Gene

  • Novel Transcript 5
  • NONHSAG022930.2 91
  • HSALNG0119154 164
  • Lnc-EIF4A3-1 165
  • AC116025.2 5

External Ids for ENSG00000262172 Gene

Previous GeneCards Identifiers for ENSG00000262172 Gene

  • GC17M077965

Summaries for ENSG00000262172 Gene

GeneCards Summary for ENSG00000262172 Gene

ENSG00000262172 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000262172 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000262172 Gene

Genomics for ENSG00000262172 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000262172 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J079984 Promoter/Enhancer 2.2 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.7 +2.8 2848 11.2 ZNF221 RNF2 CEBPG HNRNPL CREB1 GATAD2A ATF7 PRDM10 ZNF629 REST EIF4A3 CCDC40 ENGASE CBX2 TBC1D16 RNF213-AS1 ENDOV SGSH CANT1 ENSG00000262580
GH17J079996 Promoter/Enhancer 1.2 FANTOM5 Ensembl ENCODE 0.7 -4.5 -4487 2.3 RNF2 PRDM10 ZIC2 ZNF600 SCRT2 ZSCAN5C CTCF SPI1 GABPA POLR2A CCDC40 EIF4A3 ENGASE RNF213 GAA CBX4 SGSH ENSG00000262172 MF281430-034 TBC1D16
GH17J080001 Enhancer 0.8 ENCODE dbSUPER 0.4 -10.0 -9982 1.9 HNRNPL GATAD2A ZIC2 ZNF600 ESR1 TGIF2 NR3C1 MBD1 TFDP1 SSRP1 MF281430-034 ENSG00000262172 TBC1D16 CBX4
GH17J079974 Enhancer 0.8 Ensembl ENCODE 0.4 +18.0 17952 1.8 CTCF ZBTB33 REST NR2C1 ZNF600 EGR1 CTBP1 NR2C2 YY1 ZKSCAN1 lnc-CBX4-3 ENSG00000262172 TBC1D16 CBX4
GH17J079969 Enhancer 0.8 Ensembl ENCODE 0.4 +22.5 22487 1.5 CTCF ZNF143 RAD21 TRIM22 ZNF561 ZNF524 ZNF444 ZNF592 SMC3 SAP130 lnc-CBX4-3 ENSG00000262172 TBC1D16 CBX4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000262172 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000262172 Gene

Genomic Locations for ENSG00000262172 Gene
chr17:79,991,944-79,992,841
(GRCh38/hg38)
Size:
898 bases
Orientation:
Minus strand
chr17:77,965,743-77,966,640
(GRCh37/hg19)
Size:
898 bases
Orientation:
Minus strand

Genomic View for ENSG00000262172 Gene

Genes around ENSG00000262172 on UCSC Golden Path with GeneCards custom track
ENSG00000262172 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000262172 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000262172 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000262172 Gene

Proteins for ENSG00000262172 Gene

Post-translational modifications for ENSG00000262172 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000262172 Gene

Domains & Families for ENSG00000262172 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000262172 Gene

Function for ENSG00000262172 Gene

Phenotypes From GWAS Catalog for ENSG00000262172 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000262172 Gene

Localization for ENSG00000262172 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000262172 Gene

Pathways & Interactions for ENSG00000262172 Gene

PathCards logo

SuperPathways for ENSG00000262172 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000262172 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000262172 Gene

Drugs & Compounds for ENSG00000262172 Gene

No Compound Related Data Available

Transcripts for ENSG00000262172 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000262172 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000301588_9606 lncRNA 443 4

Ensembl: ENST00000576632 (view in UCSC) ,

LncBook: HSALNT0246029,

LNCipedia: lnc-EIF4A3-1:1,

NONCODE: NONHSAT056328.2,

ENSG00000262172 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000262172 Gene

No ASD Table

Relevant External Links for ENSG00000262172 Gene

GeneLoc Exon Structure for
ENSG00000262172

No data available for mRNA/cDNA for ENSG00000262172 Gene

Expression for ENSG00000262172 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000262172 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000262172 Gene

This gene is overexpressed in Testis (x10.3) and Whole Blood (x5.7).
genes like me logo Genes that share expression patterns with ENSG00000262172: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000262172 Gene

Orthologs for ENSG00000262172 Gene

Evolution for ENSG00000262172 Gene

ENSEMBL:
Gene Tree for ENSG00000262172 (if available)
TreeFam:
Gene Tree for ENSG00000262172 (if available)

No data available for Orthologs for ENSG00000262172 Gene

Paralogs for ENSG00000262172 Gene

No data available for Paralogs for ENSG00000262172 Gene

Variants for ENSG00000262172 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000262172 Gene

Disorders for ENSG00000262172 Gene

No disorders were found for ENSG00000262172 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000262172 Gene

Publications for ENSG00000262172 Gene

No publications were found for ENSG00000262172 Gene.

No data available for Mastermind for ENSG00000262172 Gene

Products for ENSG00000262172 Gene

Sources for ENSG00000262172 Gene