Aliases for ENSG00000262049 Gene

Subcategory (RNA class) for ENSG00000262049 Gene

lncRNA

Quality Score for this RNA gene is

13

Aliases for ENSG00000262049 Gene

  • Novel Transcript, Antisense To HGS 5
  • NONHSAG023018 94
  • Lnc-ARL16-1 170
  • AC139530.2 5

External Ids for ENSG00000262049 Gene

Previous GeneCards Identifiers for ENSG00000262049 Gene

  • GC17M079669

Summaries for ENSG00000262049 Gene

GeneCards Summary for ENSG00000262049 Gene

ENSG00000262049 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000262049 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000262049 Gene

Genomics for ENSG00000262049 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000262049 Gene

Promoters and enhancers for ENSG00000262049 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J081700 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 826.7 +0.5 510 4.2 ZNF785 ZNF24 ZBTB40 SP1 SREBF1 ZBTB6 MLX RBPJ POLR2A NR2F1 ENSG00000262049 ENSG00000262660 NONHSAG023019.2 MRPL12 ARL16 HGS FAAP100 CEP131 ENSG00000265678 ENSG00000260563
GH17J082492 Promoter/Enhancer 2.4 EPDnew FANTOM5 ENCODE CraniofacialAtlas dbSUPER 90.4 -792.1 -792144 5.9 GTF3C2 ZNF785 SIN3A ZNF24 ZBTB40 CTCF ZBTB6 LCORL FOXA1 MLX FOXK2 TRX-CAT1-8 hsa-miR-1273e-032 piR-33437-002 piR-32374 ENSG00000260563 ENSG00000262049 ALYREF NARF-IT1 ARL2BPP9
GH17J081864 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 82.8 -165.6 -165643 8.9 ZNF785 SIN3A ZNF24 ZBTB40 SP1 CTCF SREBF1 FOXA1 MLX RBPJ ARHGDIA ENSG00000262413 lnc-ARHGDIA-1 ENSG00000262049 TBCD CEP131 HGS NARF-IT1 ENSG00000260563 ENSG00000265678
GH17J081976 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 76.1 -274.8 -274768 3.1 ZNF24 SP1 ZBTB40 SREBF1 SIX5 RBPJ SMARCE1 POLR2A USF2 HCFC1 ASPSCR1 LOC105371939 lnc-NOTUM-2 ENSG00000262049 TBCD HGS FAAP100 CEP131 ENSG00000265678 ENSG00000262663
GH17J081384 Promoter/Enhancer 2.4 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 66.5 +307.2 307240 22.5 FOXK2 ZNF785 SIN3A ZBTB40 SP1 CTCF ZBTB6 LCORL FOXA1 MLX BAHCC1 ENSG00000279692 lnc-BAHCC1-3 lnc-TMEM105-4 ENSG00000262877 ENSG00000262049 ENSG00000260563 TEPSIN ENDOV ARL16
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000262049 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000262049 Gene

Genomic Locations for ENSG00000262049 Gene
chr17:81,701,324-81,703,300
(GRCh38/hg38)
Size:
1,977 bases
Orientation:
Minus strand
chr17:79,668,354-79,670,330
(GRCh37/hg19)
Size:
1,977 bases
Orientation:
Minus strand

Genomic View for ENSG00000262049 Gene

Genes around ENSG00000262049 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000262049 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000262049 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000262049 Gene

Proteins for ENSG00000262049 Gene

Post-translational modifications for ENSG00000262049 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000262049 Gene

Domains & Families for ENSG00000262049 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000262049 Gene

Function for ENSG00000262049 Gene

Phenotypes From GWAS Catalog for ENSG00000262049 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000262049 Gene

Localization for ENSG00000262049 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000262049 Gene

Pathways & Interactions for ENSG00000262049 Gene

PathCards logo

SuperPathways for ENSG00000262049 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000262049 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ENSG00000262049 Gene

Drugs & Compounds for ENSG00000262049 Gene

No Compound Related Data Available

Transcripts for ENSG00000262049 Gene

mRNA/cDNA for ENSG00000262049 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(3) RNACentral transcripts :
(3) LNCipedia transcripts :
(1) NONCODE transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000262049 Gene

No ASD Table

Relevant External Links for ENSG00000262049 Gene

GeneLoc Exon Structure for
ENSG00000262049

Expression for ENSG00000262049 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ENSG00000262049 Gene

genes like me logo Genes that share expression patterns with ENSG00000262049: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000262049 Gene

Orthologs for ENSG00000262049 Gene

Evolution for ENSG00000262049 Gene

ENSEMBL:
Gene Tree for ENSG00000262049 (if available)
TreeFam:
Gene Tree for ENSG00000262049 (if available)

No data available for Orthologs for ENSG00000262049 Gene

Paralogs for ENSG00000262049 Gene

No data available for Paralogs for ENSG00000262049 Gene

Variants for ENSG00000262049 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000262049 Gene

Disorders for ENSG00000262049 Gene

No disorders were found for ENSG00000262049 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000262049 Gene

Publications for ENSG00000262049 Gene

No publications were found for ENSG00000262049 Gene.

No data available for External Links for ENSG00000262049 Gene

Products for ENSG00000262049 Gene

Sources for ENSG00000262049 Gene