Aliases for ENSG00000262039 Gene

Subcategory (RNA class) for ENSG00000262039 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000262039 Gene

  • Novel Transcript, Antisense To PHB 5
  • NONHSAG022123.2 91
  • HSALNG0117177 164
  • AC091180.6 5
  • Lnc-NGFR-3 165

External Ids for ENSG00000262039 Gene

Previous GeneCards Identifiers for ENSG00000262039 Gene

  • GC17P047448

Summaries for ENSG00000262039 Gene

GeneCards Summary for ENSG00000262039 Gene

ENSG00000262039 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000262039 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000262039 Gene

Genomics for ENSG00000262039 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000262039 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J049370 Enhancer 0.7 ENCODE dbSUPER 600.7 +0.9 854 1.3 KDM1A EGR1 ZNF444 ZFHX2 DPF2 ZNF24 POLR2A EGR2 SP1 ENSG00000262039 RPL21P124 ENSG00000250186 PHB ZNF652 ENSG00000250948 LOC102724596
GH17J049371 Promoter/Enhancer 0.6 Ensembl dbSUPER 600.7 -0.1 -139 0.4 NRF1 ENSG00000262039 ZNF652 LOC102724596 PHB
GH17J049387 Enhancer 1.5 FANTOM5 ENCODE CraniofacialAtlas dbSUPER 0.4 +18.9 18875 4.5 ZNF629 IKZF1 ETV6 ZIC2 PKNOX1 NR2C1 POLR2A ZNF747 HDAC1 GABPA ZNF652 SPOP ENSG00000248714 PHB ENSG00000207127 ABI3 SNF8 PHOSPHO1 UBE2Z GNGT2
GH17J049413 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 0.3 +44.3 44258 2.4 BRCA1 ARHGAP35 SP1 HNRNPL CREB1 GATAD2A ZNF629 TFE3 SIX5 IKZF1 ENSG00000207127 PHB lnc-NGFR-6 lnc-ZNF652-4 UBE2Z CALCOCO2 ENSG00000262039 NGFR
GH17J049365 Enhancer 0.8 Ensembl ENCODE 0.7 -4.9 -4868 1.1 CTCF FOXA1 SMARCA5 CTBP1 ZNF444 MAFF MAFK PKNOX1 SIN3A RAD21 ZNF652 ENSG00000248714 ENSG00000262039 LOC102724596 PHB
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000262039 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000262039 Gene

Genomic Locations for ENSG00000262039 Gene
chr17:49,370,740-49,476,988
(GRCh38/hg38)
Size:
106,249 bases
Orientation:
Plus strand
chr17:47,448,102-47,554,350
(GRCh37/hg19)
Size:
106,249 bases
Orientation:
Plus strand

Genomic View for ENSG00000262039 Gene

Genes around ENSG00000262039 on UCSC Golden Path with GeneCards custom track
ENSG00000262039 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000262039 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000262039 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000262039 Gene

Proteins for ENSG00000262039 Gene

Post-translational modifications for ENSG00000262039 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000262039 Gene

Domains & Families for ENSG00000262039 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000262039 Gene

Function for ENSG00000262039 Gene

Phenotypes From GWAS Catalog for ENSG00000262039 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000262039 Gene

Localization for ENSG00000262039 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000262039 Gene

Pathways & Interactions for ENSG00000262039 Gene

PathCards logo

SuperPathways for ENSG00000262039 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000262039 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000262039 Gene

Drugs & Compounds for ENSG00000262039 Gene

No Compound Related Data Available

Transcripts for ENSG00000262039 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000262039 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00007BBAE9_9606 lncRNA 382 4

Ensembl: ENST00000576461 (view in UCSC) ,

LncBook: HSALNT0242159,

LNCipedia: lnc-NGFR-3:6,

NONCODE: NONHSAT175333.1,

URS0000D5B7DB_9606 lncRNA 11820 2

LncBook: HSALNT0242154,

LNCipedia: lnc-NGFR-3:18,

URS0000D57700_9606 lncRNA 11725 2

LncBook: HSALNT0242150,

LNCipedia: lnc-NGFR-3:14,

URS0000D5CEF3_9606 lncRNA 7180 2

LncBook: HSALNT0242153,

LNCipedia: lnc-NGFR-3:22,

URS0000D5A331_9606 lncRNA 6812 2

LncBook: HSALNT0242148,

LNCipedia: lnc-NGFR-3:15,

ENSG00000262039 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000262039 Gene

No ASD Table

Relevant External Links for ENSG00000262039 Gene

GeneLoc Exon Structure for
ENSG00000262039

No data available for mRNA/cDNA for ENSG00000262039 Gene

Expression for ENSG00000262039 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000262039 Gene

genes like me logo Genes that share expression patterns with ENSG00000262039: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000262039 Gene

Orthologs for ENSG00000262039 Gene

Evolution for ENSG00000262039 Gene

ENSEMBL:
Gene Tree for ENSG00000262039 (if available)
TreeFam:
Gene Tree for ENSG00000262039 (if available)

No data available for Orthologs for ENSG00000262039 Gene

Paralogs for ENSG00000262039 Gene

No data available for Paralogs for ENSG00000262039 Gene

Variants for ENSG00000262039 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000262039 Gene

Disorders for ENSG00000262039 Gene

No disorders were found for ENSG00000262039 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000262039 Gene

Publications for ENSG00000262039 Gene

No publications were found for ENSG00000262039 Gene.

No data available for Mastermind for ENSG00000262039 Gene

Products for ENSG00000262039 Gene

Sources for ENSG00000262039 Gene