Aliases for ENSG00000262038 Gene

Subcategory (RNA class) for ENSG00000262038 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000262038 Gene

  • Novel Transcript 5
  • NONHSAG019359.2 91
  • HSALNG0111198 164
  • AC007599.2 5
  • Lnc-GPT2-4 165

External Ids for ENSG00000262038 Gene

Previous GeneCards Identifiers for ENSG00000262038 Gene

  • GC16P047564

Summaries for ENSG00000262038 Gene

GeneCards Summary for ENSG00000262038 Gene

ENSG00000262038 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000262038 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000262038 Gene

Genomics for ENSG00000262038 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000262038 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J047523 Enhancer 1 Ensembl ENCODE 0.4 -5.5 -5489 1.8 GATAD2A TFE3 ZNF512 STAT3 RXRB IRF2 IKZF2 RCOR1 TRIM22 GABPA ITFG1 PHKB SHCBP1 ENSG00000262038 RNA5SP425 ABCC12
GH16J047538 Enhancer 0.9 Ensembl 0.4 +9.4 9411 0.8 GATAD2A TFE3 SOX13 NFKBIZ RCOR2 RXRB IRF2 GABPA CEBPA FOXK2 piR-61101-244 ENSG00000262038 ITFG1 PHKB ABCC12
GH16J047520 Enhancer 0.8 ENCODE 0.4 -8.7 -8705 0.2 JUND PKNOX1 POLR2A MTA1 DPF2 HDAC1 SOX6 TCF12 EP300 HMBOX1 ENSG00000262038 RNA5SP425 ITFG1 PHKB ABCC12
GH16J047506 Enhancer 0.5 Ensembl 0.4 -22.1 -22089 1.8 RXRB CEBPA ZGPAT SMAD4 RARA THRB NR2F6 RNA5SP425 piR-31661-001 ITFG1 PHKB ENSG00000262038 ABCC12
GH16J047511 Enhancer 0.2 Ensembl 0.4 -17.7 -17689 0.6 ITFG1 PHKB RNA5SP425 ENSG00000262038 ABCC12
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000262038 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000262038 Gene

Genomic Locations for ENSG00000262038 Gene
chr16:47,529,190-47,529,916
(GRCh38/hg38)
Size:
727 bases
Orientation:
Plus strand
chr16:47,563,101-47,563,827
(GRCh37/hg19)
Size:
727 bases
Orientation:
Plus strand

Genomic View for ENSG00000262038 Gene

Genes around ENSG00000262038 on UCSC Golden Path with GeneCards custom track
ENSG00000262038 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000262038 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000262038 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000262038 Gene

Proteins for ENSG00000262038 Gene

Post-translational modifications for ENSG00000262038 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000262038 Gene

Domains & Families for ENSG00000262038 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000262038 Gene

Function for ENSG00000262038 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000262038 Gene

Localization for ENSG00000262038 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000262038 Gene

Pathways & Interactions for ENSG00000262038 Gene

PathCards logo

SuperPathways for ENSG00000262038 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000262038 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000262038 Gene

Drugs & Compounds for ENSG00000262038 Gene

No Compound Related Data Available

Transcripts for ENSG00000262038 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000262038 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00002AE7E0_9606 lncRNA 493 4

Ensembl: ENST00000573040 (view in UCSC) ,

LncBook: HSALNT0230460,

LNCipedia: lnc-GPT2-4:1,

NONCODE: NONHSAT142299.2,

URS00008BF5C8_9606 lncRNA 494 3

LncBook: HSALNT0230458,

LNCipedia: lnc-GPT2-4:2,

NONCODE: NONHSAT142298.2,

ENSG00000262038 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000262038 Gene

No ASD Table

Relevant External Links for ENSG00000262038 Gene

GeneLoc Exon Structure for
ENSG00000262038

No data available for mRNA/cDNA for ENSG00000262038 Gene

Expression for ENSG00000262038 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000262038 Gene

genes like me logo Genes that share expression patterns with ENSG00000262038: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000262038 Gene

Orthologs for ENSG00000262038 Gene

Evolution for ENSG00000262038 Gene

ENSEMBL:
Gene Tree for ENSG00000262038 (if available)
TreeFam:
Gene Tree for ENSG00000262038 (if available)

No data available for Orthologs for ENSG00000262038 Gene

Paralogs for ENSG00000262038 Gene

No data available for Paralogs for ENSG00000262038 Gene

Variants for ENSG00000262038 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000262038 Gene

Disorders for ENSG00000262038 Gene

Additional Disease Information for ENSG00000262038

No disorders were found for ENSG00000262038 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000262038 Gene

Publications for ENSG00000262038 Gene

No publications were found for ENSG00000262038 Gene.

No data available for Mastermind for ENSG00000262038 Gene

Products for ENSG00000262038 Gene

Sources for ENSG00000262038 Gene