Aliases for ENSG00000261978 Gene

Subcategory (RNA class) for ENSG00000261978 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for ENSG00000261978 Gene

  • Novel Transcript, Antisense To TBC1D16 5
  • NONHSAG022931 92
  • HSALNG0119156 167
  • Lnc-CCDC40-1 168
  • AC116025.1 5

External Ids for ENSG00000261978 Gene

Previous GeneCards Identifiers for ENSG00000261978 Gene

  • GC17P077997

Summaries for ENSG00000261978 Gene

GeneCards Summary for ENSG00000261978 Gene

ENSG00000261978 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000261978 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000261978 Gene

Genomics for ENSG00000261978 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000261978 Gene

Promoters and enhancers for ENSG00000261978 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J080022 Promoter/Enhancer 1.6 Ensembl ENCODE CraniofacialAtlas dbSUPER 500.7 +1.1 1078 4.2 POLR2G NCOR1 NONO ZIC2 KDM6A ZBTB25 TGIF2 ZBTB7A SKI TEAD1 ENSG00000261978 CCDC40 EIF4A3 GAA CHMP6 TBC1D16
GH17J080876 Enhancer 1.2 Ensembl ENCODE dbSUPER 5.9 +853.7 853707 2.8 ZBTB40 SP1 EP300 ZIC2 JUND RELA TRIM22 BCL11A TCF12 CBFB ENSG00000261978 HSALNG0119215 HSALNG0119211 RPTOR lnc-TMEM105-1
GH17J080879 Enhancer 1 FANTOM5 Ensembl CraniofacialAtlas dbSUPER 5.9 +856.9 856907 2.4 ZKSCAN1 USF1 EGR2 FOXA1 DPF2 RPTOR ENSG00000261978 HSALNG0119215 HSALNG0119211 lnc-TMEM105-1
GH17J080018 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.7 -4.1 -4108 2.2 NCOR1 TCF7 ZBTB26 SRSF1 EZH2 FOXA2 CEBPB KAT7 TFDP1 SAP130 EIF4A3 CCDC40 GAA ENSG00000261978 MF281430-034 TBC1D16
GH17J080021 Enhancer 0.8 Ensembl dbSUPER 0.7 -2.1 -2093 0.4 NONO TSC22D4 ZNF282 CREB1 MLLT1 TARDBP POU2F2 STAT5A NBN NFATC1 EIF4A3 ENSG00000261978 TBC1D16 MF281430-034
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000261978 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000261978 Gene

Genomic Locations for ENSG00000261978 Gene
chr17:80,023,894-80,026,107
(GRCh38/hg38)
Size:
2,214 bases
Orientation:
Plus strand
chr17:77,997,693-77,999,906
(GRCh37/hg19)
Size:
2,214 bases
Orientation:
Plus strand

Genomic View for ENSG00000261978 Gene

Genes around ENSG00000261978 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000261978 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000261978 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000261978 Gene

Proteins for ENSG00000261978 Gene

Post-translational modifications for ENSG00000261978 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000261978 Gene

Domains & Families for ENSG00000261978 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000261978 Gene

Function for ENSG00000261978 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000261978 Gene

Localization for ENSG00000261978 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000261978 Gene

Pathways & Interactions for ENSG00000261978 Gene

PathCards logo

SuperPathways for ENSG00000261978 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ENSG00000261978 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000261978 Gene

Drugs & Compounds for ENSG00000261978 Gene

No Compound Related Data Available

Transcripts for ENSG00000261978 Gene

mRNA/cDNA for ENSG00000261978 Gene

4 RNACentral transcripts :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
3 NONCODE transcripts :
1 LncBook transcripts :
3 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000261978 Gene

No ASD Table

Relevant External Links for ENSG00000261978 Gene

GeneLoc Exon Structure for
ENSG00000261978

Expression for ENSG00000261978 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000261978 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000261978 Gene

This gene is overexpressed in Brain - Cerebellum (x11.5), Brain - Cerebellar Hemisphere (x11.5), Liver (x9.7), and Kidney - Cortex (x5.0).
genes like me logo Genes that share expression patterns with ENSG00000261978: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000261978 Gene

Orthologs for ENSG00000261978 Gene

Evolution for ENSG00000261978 Gene

ENSEMBL:
Gene Tree for ENSG00000261978 (if available)
TreeFam:
Gene Tree for ENSG00000261978 (if available)

No data available for Orthologs for ENSG00000261978 Gene

Paralogs for ENSG00000261978 Gene

No data available for Paralogs for ENSG00000261978 Gene

Variants for ENSG00000261978 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000261978 Gene

Disorders for ENSG00000261978 Gene

No disorders were found for ENSG00000261978 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000261978 Gene

Publications for ENSG00000261978 Gene

No publications were found for ENSG00000261978 Gene.

No data available for Mastermind for ENSG00000261978 Gene

Products for ENSG00000261978 Gene

Sources for ENSG00000261978 Gene