Aliases for ENSG00000261959 Gene

Subcategory (RNA class) for ENSG00000261959 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000261959 Gene

  • Novel Transcript, Antisense To SGCA 5
  • NONHSAG022162.2 91
  • HSALNG0117261 164
  • Lnc-PPP1R9B-2 165
  • AC015909.3 5

External Ids for ENSG00000261959 Gene

Previous GeneCards Identifiers for ENSG00000261959 Gene

  • GC17M048241

Summaries for ENSG00000261959 Gene

GeneCards Summary for ENSG00000261959 Gene

ENSG00000261959 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000261959 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000261959 Gene

Genomics for ENSG00000261959 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000261959 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J050163 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 600.7 +1.3 1302 3.7 SP1 PRDM10 KDM1A RELA ZIC2 ZSCAN4 IKZF2 ZNF341 HES1 ARID3A SGCA ENSG00000261959 LOC105371818 SAMD14 COL1A1
GH17J050169 Promoter 0.3 Ensembl 600.7 -1.2 -1168 0.4 ENSG00000261959 LOC105371818 SGCA H1-9P lnc-COL1A1-6 COL1A1
GH17J050046 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 5.2 +109.8 109800 21.5 CREB1 ZBTB33 PRDM10 ZNF629 IKZF1 CTCF ZNF692 TARDBP ZHX2 JUND ITGA3 PICART1 ENSG00000262837 LUC7L3 FAM117A ENSG00000204584 PDK2 ENSG00000250282 ENSG00000250286 COL1A1
GH17J050168 Promoter/Enhancer 1.3 Ensembl ENCODE 0.7 -2.8 -2804 1.6 CREB1 CTCF TEAD4 PRDM10 ZNF629 ZNF692 TARDBP JUND FOXA1 PRDM1 SGCA PICART1 LUC7L3 COL1A1 ENSG00000262837 FAM117A CACNA1G-AS1 NXPH3 ENSG00000250286 ENSG00000261959
GH17J050172 Enhancer 0.7 ENCODE 0.7 -4.3 -4342 0.2 PRDM1 IKZF2 TRIM22 PKNOX1 EED DPF2 RELB RUNX3 GATAD2B TCF12 ENSG00000261959 SGCA H1-9P lnc-COL1A1-6 COL1A1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000261959 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000261959 Gene

Genomic Locations for ENSG00000261959 Gene
chr17:50,163,523-50,166,833
(GRCh38/hg38)
Size:
3,311 bases
Orientation:
Minus strand
chr17:48,240,884-48,242,677
(GRCh37/hg19)
Size:
1,794 bases
Orientation:
Minus strand

Genomic View for ENSG00000261959 Gene

Genes around ENSG00000261959 on UCSC Golden Path with GeneCards custom track
ENSG00000261959 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000261959 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000261959 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000261959 Gene

Proteins for ENSG00000261959 Gene

Post-translational modifications for ENSG00000261959 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000261959 Gene

Domains & Families for ENSG00000261959 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000261959 Gene

Function for ENSG00000261959 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000261959 Gene

Localization for ENSG00000261959 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000261959 Gene

Pathways & Interactions for ENSG00000261959 Gene

PathCards logo

SuperPathways for ENSG00000261959 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000261959 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000261959 Gene

Drugs & Compounds for ENSG00000261959 Gene

No Compound Related Data Available

Transcripts for ENSG00000261959 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000261959 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00003014E5_9606 lncRNA 1794 3

Ensembl: ENST00000572855 (view in UCSC) ,

LNCipedia: lnc-PPP1R9B-2:2,

NONCODE: NONHSAT054596.2,

URS00008B21C7_9606 lncRNA 1690 3

LncBook: HSALNT0242308,

LNCipedia: lnc-PPP1R9B-2:1,

NONCODE: NONHSAT054597.2,

URS00009AF215_9606 lncRNA 580 2

LncBook: HSALNT0242306,

NONCODE: NONHSAT176334.1,

ENSG00000261959 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000261959 Gene

No ASD Table

Relevant External Links for ENSG00000261959 Gene

GeneLoc Exon Structure for
ENSG00000261959

No data available for mRNA/cDNA for ENSG00000261959 Gene

Expression for ENSG00000261959 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000261959 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000261959 Gene

This gene is overexpressed in Nerve - Tibial (x8.2), Testis (x6.5), and Brain - Nucleus accumbens (basal ganglia) (x4.4).
genes like me logo Genes that share expression patterns with ENSG00000261959: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000261959 Gene

Orthologs for ENSG00000261959 Gene

Evolution for ENSG00000261959 Gene

ENSEMBL:
Gene Tree for ENSG00000261959 (if available)
TreeFam:
Gene Tree for ENSG00000261959 (if available)

No data available for Orthologs for ENSG00000261959 Gene

Paralogs for ENSG00000261959 Gene

No data available for Paralogs for ENSG00000261959 Gene

Variants for ENSG00000261959 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000261959 Gene

Disorders for ENSG00000261959 Gene

Additional Disease Information for ENSG00000261959

No disorders were found for ENSG00000261959 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000261959 Gene

Publications for ENSG00000261959 Gene

No publications were found for ENSG00000261959 Gene.

No data available for Mastermind for ENSG00000261959 Gene

Products for ENSG00000261959 Gene

Sources for ENSG00000261959 Gene