Aliases for ENSG00000261916 Gene

Subcategory (RNA class) for ENSG00000261916 Gene

lncRNA

Quality Score for this RNA gene is

13

Aliases for ENSG00000261916 Gene

  • Novel Transcript, Sense Intronic To Readthrough SHPK-TRPV1 5
  • NONHSAG020539 94
  • AC027796.1 5
  • Lnc-SHPK-1 170

External Ids for ENSG00000261916 Gene

Previous GeneCards Identifiers for ENSG00000261916 Gene

  • GC17M003505

Summaries for ENSG00000261916 Gene

GeneCards Summary for ENSG00000261916 Gene

ENSG00000261916 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000261916 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000261916 Gene

Genomics for ENSG00000261916 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000261916 Gene

Promoters and enhancers for ENSG00000261916 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J003603 Enhancer 0.6 Ensembl ENCODE 750.6 -1.4 -1429 1.4 CTCF CREB1 JUND FOS JUN ENSG00000261916 SHPK CTNS TRPV1 piR-57460-265 ENSG00000262304
GH17J003594 Enhancer 0.7 Ensembl ENCODE 0.4 +7.5 7471 2.4 GLIS2 ZIC2 PRDM10 SCRT2 SCRT1 ZBTB17 FOS ZFP69B ZNF335 GLIS1 5MWI_A-071 RF00017-2233 TRPV1 SHPK TRPV3 ENSG00000261916 ENSG00000262304
GH17J003597 Promoter 0.3 EPDnew 0.4 +5.2 5177 0.1 TRPV1 5MWI_A-071 ENSG00000261916 ENSG00000262304
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000261916 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000261916 Gene

Genomic Locations for ENSG00000261916 Gene
chr17:3,601,761-3,602,272
(GRCh38/hg38)
Size:
512 bases
Orientation:
Minus strand
chr17:3,505,055-3,505,566
(GRCh37/hg19)
Size:
512 bases
Orientation:
Minus strand

Genomic View for ENSG00000261916 Gene

Genes around ENSG00000261916 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000261916 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000261916 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000261916 Gene

Proteins for ENSG00000261916 Gene

Post-translational modifications for ENSG00000261916 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000261916 Gene

Domains & Families for ENSG00000261916 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000261916 Gene

Function for ENSG00000261916 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000261916 Gene

Localization for ENSG00000261916 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000261916 Gene

Pathways & Interactions for ENSG00000261916 Gene

PathCards logo

SuperPathways for ENSG00000261916 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000261916 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ENSG00000261916 Gene

Drugs & Compounds for ENSG00000261916 Gene

No Compound Related Data Available

Transcripts for ENSG00000261916 Gene

mRNA/cDNA for ENSG00000261916 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNACentral transcripts :
(1) LNCipedia transcripts :
(1) NONCODE transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000261916 Gene

No ASD Table

Relevant External Links for ENSG00000261916 Gene

GeneLoc Exon Structure for
ENSG00000261916

Expression for ENSG00000261916 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ENSG00000261916 Gene

genes like me logo Genes that share expression patterns with ENSG00000261916: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000261916 Gene

Orthologs for ENSG00000261916 Gene

Evolution for ENSG00000261916 Gene

ENSEMBL:
Gene Tree for ENSG00000261916 (if available)
TreeFam:
Gene Tree for ENSG00000261916 (if available)

No data available for Orthologs for ENSG00000261916 Gene

Paralogs for ENSG00000261916 Gene

No data available for Paralogs for ENSG00000261916 Gene

Variants for ENSG00000261916 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000261916 Gene

Disorders for ENSG00000261916 Gene

No disorders were found for ENSG00000261916 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000261916 Gene

Publications for ENSG00000261916 Gene

No publications were found for ENSG00000261916 Gene.

No data available for External Links for ENSG00000261916 Gene

Products for ENSG00000261916 Gene

Sources for ENSG00000261916 Gene