Aliases for ENSG00000261889 Gene

Subcategory (RNA class) for ENSG00000261889 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for ENSG00000261889 Gene

  • Novel Transcript 5
  • NONHSAG018395.2 91
  • Lnc-ZSCAN10-4 165
  • AC108134.2 5

External Ids for ENSG00000261889 Gene

Previous GeneCards Identifiers for ENSG00000261889 Gene

  • GC16M003165
  • GC16M003168
  • GC16M003158

Summaries for ENSG00000261889 Gene

GeneCards Summary for ENSG00000261889 Gene

ENSG00000261889 is an RNA Gene, and is affiliated with the lncRNA class.

Rfam classification for ENSG00000261889 Gene

Additional gene information for ENSG00000261889 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for ENSG00000261889 Gene

Genomics for ENSG00000261889 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000261889 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J003156 Promoter/Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 600.7 0.0 -2 3.9 RNF2 ARHGAP35 CREB1 GATAD2A PRDM10 ZNF629 ZNF512 SOX13 IKZF1 NFKBIZ ENSG00000261889 TRK-CTT3-1 TRP-AGG3-1-001 TRP-TGG3-3 piR-33161-002 ZNF75A ZNF213-AS1 ZNF205 E4F1 RNPS1
GH16J003148 Promoter/Enhancer 1.6 ENCODE CraniofacialAtlas dbSUPER 0.4 +7.5 7497 4.8 ZNF221 RNF2 HNRNPL GATAD2A CTCF TEAD4 PRDM10 ZNF629 TFE3 RFX1 ZNF213-AS1 AJ535831-001 HG983989 TRP-AGG6-1 TRR-CCG1-3 TRR-CCT3-1 lnc-ZNF213-3 lnc-ZSCAN10-7 piR-54341-001 piR-57460-230
GH16J003155 Enhancer 0.3 Ensembl 0.7 +3.1 3141 0.4 ZNF571 BHLHE40 TRK-CTT3-1 piR-33161-002 ZSCAN32 ZNF75A CLUAP1 TIGD7 ZNF213-AS1 ZNF174 MTCO1P28 MTRNR2L4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000261889 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000261889 Gene

Genomic Locations for ENSG00000261889 Gene
chr16:3,152,176-3,158,742
(GRCh38/hg38)
Size:
6,567 bases
Orientation:
Minus strand

Genomic View for ENSG00000261889 Gene

Genes around ENSG00000261889 on UCSC Golden Path with GeneCards custom track
ENSG00000261889 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000261889 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000261889 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000261889 Gene

Proteins for ENSG00000261889 Gene

Post-translational modifications for ENSG00000261889 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000261889 Gene

Domains & Families for ENSG00000261889 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000261889 Gene

Function for ENSG00000261889 Gene

Phenotypes From GWAS Catalog for ENSG00000261889 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000261889 Gene

Localization for ENSG00000261889 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000261889 Gene

Pathways & Interactions for ENSG00000261889 Gene

PathCards logo

SuperPathways for ENSG00000261889 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000261889 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000261889 Gene

Drugs & Compounds for ENSG00000261889 Gene

No Compound Related Data Available

Transcripts for ENSG00000261889 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000261889 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00003E2626_9606 lncRNA 748 3

Ensembl: ENST00000570843 (view in UCSC) ,

LNCipedia: lnc-ZSCAN10-4:1,

NONCODE: NONHSAT147980.2,

URS0000D57375_9606 lncRNA 6377 1

LNCipedia: lnc-ZSCAN10-4:3,

URS0000D5E2D1_9606 lncRNA 1772 1

LNCipedia: lnc-ZSCAN10-4:2,

ENSG00000261889 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000261889 Gene

No ASD Table

Relevant External Links for ENSG00000261889 Gene

GeneLoc Exon Structure for
ENSG00000261889

No data available for mRNA/cDNA for ENSG00000261889 Gene

Expression for ENSG00000261889 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000261889 Gene

Orthologs for ENSG00000261889 Gene

Evolution for ENSG00000261889 Gene

ENSEMBL:
Gene Tree for ENSG00000261889 (if available)
TreeFam:
Gene Tree for ENSG00000261889 (if available)

No data available for Orthologs for ENSG00000261889 Gene

Paralogs for ENSG00000261889 Gene

No data available for Paralogs for ENSG00000261889 Gene

Variants for ENSG00000261889 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000261889 Gene

Disorders for ENSG00000261889 Gene

No disorders were found for ENSG00000261889 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000261889 Gene

Publications for ENSG00000261889 Gene

No publications were found for ENSG00000261889 Gene.

No data available for Mastermind for ENSG00000261889 Gene

Products for ENSG00000261889 Gene

Sources for ENSG00000261889 Gene