Aliases for ENSG00000261888 Gene

Subcategory (RNA class) for ENSG00000261888 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for ENSG00000261888 Gene

  • Novel Transcript 5
  • NONHSAG023129.2 91
  • Lnc-METRNL-1 165
  • AC144831.1 5

External Ids for ENSG00000261888 Gene

Previous GeneCards Identifiers for ENSG00000261888 Gene

  • GC17P081061

Summaries for ENSG00000261888 Gene

GeneCards Summary for ENSG00000261888 Gene

ENSG00000261888 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000261888 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000261888 Gene

Genomics for ENSG00000261888 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000261888 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J083101 Promoter/Enhancer 1.2 Ensembl ENCODE dbSUPER 612.4 -1.1 -1054 2.8 IKZF1 ZIC2 PATZ1 KLF9 ZBTB20 SP2 RFX1 SMARCA5 DEAF1 CEBPB ENSG00000261888 METRNL B3GNTL1 ENSG00000262147 LOC101929552 LOC107987251
GH17J083105 Enhancer 0.6 ENCODE dbSUPER 611.2 +1.8 1791 0.2 FOXA1 GATA3 GLIS1 ENSG00000261888 LOC101930496 LOC107987251 METRNL
GH17J083104 Enhancer 0.5 dbSUPER 609.7 +0.9 874 0.7 CREB1 ZNF341 PRDM10 GLIS1 RAD21 KLF1 ZNF579 ENSG00000261888 LOC107987251 LOC101930496 METRNL
GH17J083097 Promoter/Enhancer 1.6 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 15.2 -5.0 -4986 2.6 HNRNPL ZHX2 FOXA1 ZIC2 SCRT2 ESR1 ZNF444 POLR2A ZNF217 SMARCB1 ENSG00000274370 LOC107987251 piR-54503 ENSG00000261888 B3GNTL1 METRNL
GH17J083090 Promoter/Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 14.1 -12.7 -12685 2.1 HNRNPL ZBTB33 ZFX ESRRA ZNF217 MAX ZFHX2 BCL6 FOS NRF1 HSALNG0119499 ENSG00000261888 ENSG00000262663 METRNL
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000261888 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000261888 Gene

Genomic Locations for ENSG00000261888 Gene
chr17:83,104,255-83,106,910
(GRCh38/hg38)
Size:
2,656 bases
Orientation:
Plus strand
chr17:81,061,205-81,063,860
(GRCh37/hg19)
Size:
2,656 bases
Orientation:
Plus strand

Genomic View for ENSG00000261888 Gene

Genes around ENSG00000261888 on UCSC Golden Path with GeneCards custom track
ENSG00000261888 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000261888 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000261888 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000261888 Gene

Proteins for ENSG00000261888 Gene

Post-translational modifications for ENSG00000261888 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000261888 Gene

Domains & Families for ENSG00000261888 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000261888 Gene

Function for ENSG00000261888 Gene

Phenotypes From GWAS Catalog for ENSG00000261888 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000261888 Gene

Localization for ENSG00000261888 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000261888 Gene

Pathways & Interactions for ENSG00000261888 Gene

PathCards logo

SuperPathways for ENSG00000261888 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000261888 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000261888 Gene

Drugs & Compounds for ENSG00000261888 Gene

No Compound Related Data Available

Transcripts for ENSG00000261888 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000261888 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00004F7B6A_9606 lncRNA 2656 3

Ensembl: ENST00000573312 (view in UCSC) ,

LNCipedia: lnc-METRNL-1:1,

NONCODE: NONHSAT056773.2,

ENSG00000261888 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000261888 Gene

No ASD Table

Relevant External Links for ENSG00000261888 Gene

GeneLoc Exon Structure for
ENSG00000261888

No data available for mRNA/cDNA for ENSG00000261888 Gene

Expression for ENSG00000261888 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000261888 Gene

genes like me logo Genes that share expression patterns with ENSG00000261888: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000261888 Gene

Orthologs for ENSG00000261888 Gene

Evolution for ENSG00000261888 Gene

ENSEMBL:
Gene Tree for ENSG00000261888 (if available)
TreeFam:
Gene Tree for ENSG00000261888 (if available)

No data available for Orthologs for ENSG00000261888 Gene

Paralogs for ENSG00000261888 Gene

No data available for Paralogs for ENSG00000261888 Gene

Variants for ENSG00000261888 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000261888 Gene

Disorders for ENSG00000261888 Gene

Additional Disease Information for ENSG00000261888

No disorders were found for ENSG00000261888 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000261888 Gene

Publications for ENSG00000261888 Gene

No publications were found for ENSG00000261888 Gene.

No data available for Mastermind for ENSG00000261888 Gene

Products for ENSG00000261888 Gene

Sources for ENSG00000261888 Gene