Aliases for ENSG00000261654 Gene

Subcategory (RNA class) for ENSG00000261654 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for ENSG00000261654 Gene

  • Novel Transcript, Sense Overlapping C1orf103 5
  • NONHSAG002392.2 91
  • Lnc-LRIF1-1 165
  • AL360270.2 5

External Ids for ENSG00000261654 Gene

Previous GeneCards Identifiers for ENSG00000261654 Gene

  • GC01M111478

Summaries for ENSG00000261654 Gene

GeneCards Summary for ENSG00000261654 Gene

ENSG00000261654 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000261654 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000261654 Gene

Genomics for ENSG00000261654 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000261654 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J110889 Enhancer 0.9 dbSUPER 5.7 +51.1 51125 3.4 ZNF512 LEF1 IKZF1 POLR2A JUND PKNOX1 MTA1 BRD9 ZNF24 DPF2 CD53 ENSG00000261654 LRIF1
GH01J110887 Enhancer 0.4 dbSUPER 4.6 +54.2 54181 1.9 ZBTB33 CBFA2T2 CBFA2T3 CD53 ENSG00000261654 LRIF1
GH01J110870 Promoter/Enhancer 2.1 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 0.2 +65.4 65378 12.9 ARHGAP35 SP1 ZNF629 RFX1 LEF1 IKZF1 POLR2A BACH1 ETV6 JUND CD53 LINC01160 DRAM2 KCNA3 LRIF1 ENSG00000261654
GH01J110916 Enhancer 0.9 ENCODE 0.3 +25.5 25457 1.3 ZNF512 LEF1 IKZF1 BACH1 ZHX2 ETV6 JUND MTA2 PKNOX1 MTA1 DRAM2 CD53 ENSG00000261654 LRIF1
GH01J110927 Enhancer 0.6 Ensembl 0.4 +14.9 14852 0.2 ZNF512 JUND KAT8 ZNF10 TCF7 JUN YY1 FOSL1 FOSL2 DPF2 DRAM2 ENSG00000261654 LRIF1 CD53
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000261654 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000261654 Gene

Genomic Locations for ENSG00000261654 Gene
chr1:110,936,369-110,942,353
(GRCh38/hg38)
Size:
5,985 bases
Orientation:
Minus strand
chr1:111,478,991-111,484,975
(GRCh37/hg19)
Size:
5,985 bases
Orientation:
Minus strand

Genomic View for ENSG00000261654 Gene

Genes around ENSG00000261654 on UCSC Golden Path with GeneCards custom track
ENSG00000261654 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000261654 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000261654 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000261654 Gene

Proteins for ENSG00000261654 Gene

Post-translational modifications for ENSG00000261654 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000261654 Gene

Domains & Families for ENSG00000261654 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000261654 Gene

Function for ENSG00000261654 Gene

Phenotypes From GWAS Catalog for ENSG00000261654 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000261654 Gene

Localization for ENSG00000261654 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000261654 Gene

Pathways & Interactions for ENSG00000261654 Gene

PathCards logo

SuperPathways for ENSG00000261654 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000261654 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000261654 Gene

Drugs & Compounds for ENSG00000261654 Gene

No Compound Related Data Available

Transcripts for ENSG00000261654 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000261654 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000488FA5_9606 lncRNA 5985 3

Ensembl: ENST00000562952 (view in UCSC) ,

LNCipedia: lnc-LRIF1-1:1,

NONCODE: NONHSAT005151.2,

ENSG00000261654 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000261654 Gene

No ASD Table

Relevant External Links for ENSG00000261654 Gene

GeneLoc Exon Structure for
ENSG00000261654

No data available for mRNA/cDNA for ENSG00000261654 Gene

Expression for ENSG00000261654 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000261654 Gene

genes like me logo Genes that share expression patterns with ENSG00000261654: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000261654 Gene

Orthologs for ENSG00000261654 Gene

Evolution for ENSG00000261654 Gene

ENSEMBL:
Gene Tree for ENSG00000261654 (if available)
TreeFam:
Gene Tree for ENSG00000261654 (if available)

No data available for Orthologs for ENSG00000261654 Gene

Paralogs for ENSG00000261654 Gene

No data available for Paralogs for ENSG00000261654 Gene

Variants for ENSG00000261654 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000261654 Gene

Disorders for ENSG00000261654 Gene

Additional Disease Information for ENSG00000261654

No disorders were found for ENSG00000261654 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000261654 Gene

Publications for ENSG00000261654 Gene

No publications were found for ENSG00000261654 Gene.

No data available for Mastermind for ENSG00000261654 Gene

Products for ENSG00000261654 Gene

Sources for ENSG00000261654 Gene