Aliases for ENSG00000261654 Gene

Subcategory (RNA class) for ENSG00000261654 Gene

lncRNA

Quality Score for this RNA gene is

13

Aliases for ENSG00000261654 Gene

  • Novel Transcript, Sense Overlapping C1orf103 5
  • NONHSAG002392 94
  • Lnc-LRIF1-1 170
  • AL360270.2 5

External Ids for ENSG00000261654 Gene

Previous GeneCards Identifiers for ENSG00000261654 Gene

  • GC01M111478

Summaries for ENSG00000261654 Gene

GeneCards Summary for ENSG00000261654 Gene

ENSG00000261654 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000261654 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000261654 Gene

Genomics for ENSG00000261654 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000261654 Gene

Promoters and enhancers for ENSG00000261654 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J110889 Enhancer 0.8 dbSUPER 5.7 +51.1 51125 3.4 SMARCE1 ELF1 TEAD4 CBFA2T2 BACH1 SMARCA4 ZNF639 TRIM24 MTA1 IKZF1 CEPT1 ENSG00000258634 ENSG00000273373 ENSG00000243960 DRAM2 STRIP1 ENSG00000261654 CD53
GH01J110887 Enhancer 0.4 dbSUPER 4.6 +54.2 54181 1.9 CBFA2T2 ZBTB33 CBFA2T3 CD53 ENSG00000261654
GH01J110870 Promoter/Enhancer 2.1 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 0.2 +65.4 65378 12.9 ZNF24 ZBTB40 SP1 SMARCE1 MYC CC2D1A ETV6 ELF1 RELA L3MBTL2 CD53 STRIP1 ENSG00000258634 UBL4B ENSG00000273373 LINC01160 DRAM2 KCNA3 LRIF1 ENSG00000261654
GH01J110916 Enhancer 0.9 ENCODE 0.3 +25.5 25457 1.3 ZBTB40 SMARCE1 CC2D1A L3MBTL2 TEAD4 ZKSCAN8 ZNF148 GTF2F1 MAFK BACH1 STRIP1 ENSG00000258634 UBL4B ENSG00000273373 DRAM2 CD53 ENSG00000261654
GH01J110927 Enhancer 0.6 Ensembl 0.4 +14.9 14852 0.2 SMARCE1 SMARCA4 ZNF512 JUN JUND ZNF10 FOSL1 DPF2 FOS ZEB2 DRAM2 ENSG00000261654 CD53
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000261654 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000261654 Gene

Genomic Locations for ENSG00000261654 Gene
chr1:110,936,369-110,942,353
(GRCh38/hg38)
Size:
5,985 bases
Orientation:
Minus strand
chr1:111,478,991-111,484,975
(GRCh37/hg19)
Size:
5,985 bases
Orientation:
Minus strand

Genomic View for ENSG00000261654 Gene

Genes around ENSG00000261654 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000261654 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000261654 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000261654 Gene

Proteins for ENSG00000261654 Gene

Post-translational modifications for ENSG00000261654 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000261654 Gene

Domains & Families for ENSG00000261654 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000261654 Gene

Function for ENSG00000261654 Gene

Phenotypes From GWAS Catalog for ENSG00000261654 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000261654 Gene

Localization for ENSG00000261654 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000261654 Gene

Pathways & Interactions for ENSG00000261654 Gene

PathCards logo

SuperPathways for ENSG00000261654 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000261654 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ENSG00000261654 Gene

Drugs & Compounds for ENSG00000261654 Gene

No Compound Related Data Available

Transcripts for ENSG00000261654 Gene

mRNA/cDNA for ENSG00000261654 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNACentral transcripts :
(1) NONCODE transcripts :
(1) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000261654 Gene

No ASD Table

Relevant External Links for ENSG00000261654 Gene

GeneLoc Exon Structure for
ENSG00000261654

Expression for ENSG00000261654 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ENSG00000261654 Gene

genes like me logo Genes that share expression patterns with ENSG00000261654: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000261654 Gene

Orthologs for ENSG00000261654 Gene

Evolution for ENSG00000261654 Gene

ENSEMBL:
Gene Tree for ENSG00000261654 (if available)
TreeFam:
Gene Tree for ENSG00000261654 (if available)

No data available for Orthologs for ENSG00000261654 Gene

Paralogs for ENSG00000261654 Gene

No data available for Paralogs for ENSG00000261654 Gene

Variants for ENSG00000261654 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000261654 Gene

Disorders for ENSG00000261654 Gene

No disorders were found for ENSG00000261654 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000261654 Gene

Publications for ENSG00000261654 Gene

No publications were found for ENSG00000261654 Gene.

No data available for External Links for ENSG00000261654 Gene

Products for ENSG00000261654 Gene

Sources for ENSG00000261654 Gene