Aliases for ENSG00000261644 Gene

Subcategory (RNA class) for ENSG00000261644 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for ENSG00000261644 Gene

  • Novel Transcript, Antisense To CYLD And NOD2 5
  • HSALNG0111361 167
  • NONHSAG019428 92
  • NONHSAG019429 92
  • Lnc-SNX20-1 168
  • AC007728.2 5

External Ids for ENSG00000261644 Gene

Previous GeneCards Identifiers for ENSG00000261644 Gene

  • GC16M050769

Summaries for ENSG00000261644 Gene

GeneCards Summary for ENSG00000261644 Gene

ENSG00000261644 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000261644 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000261644 Gene

Genomics for ENSG00000261644 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000261644 Gene

Promoters and enhancers for ENSG00000261644 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J050740 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 510.9 -1.7 -1670 7.7 ZBTB40 CTCF SIN3A NRF1 SP1 NCOR1 PHF8 SIX5 FOS ZIC2 CYLD ENSG00000261644 LOC102724907 NOD2 SNX20 BRD7 TENT4B ADCY7 MIR3181 ENSG00000260616
GH16J050805 Promoter/Enhancer 1.6 Ensembl ENCODE CraniofacialAtlas 5.1 -63.7 -63700 1.4 ZNF217 CTCF TEAD4 TRIM28 TARDBP REST ZBTB25 TGIF2 RAD21 CTBP1 LOC105371251 LINC02168 BRD7 ENSG00000261644 RF00017-2070
GH16J050771 Enhancer 0.8 Ensembl ENCODE dbSUPER 9.5 -28.4 -28386 3.2 EP300 NFE2 FOSL1 NFE2L2 FOS USF2 BRD7 NOD2 ENSG00000261644 CYLD LOC102724907 ENSG00000260616
GH16J050756 Enhancer 0.8 Ensembl dbSUPER 9.5 -17.4 -17386 10 ZNF316 MAFF MAFK SPI1 NFE2 NFE2L1 MAFG NFE2L2 ZNF184 MNT SNX20 BRD7 NOD2 ENSG00000205414 ENSG00000261644 LOC102724907 CYLD ENSG00000260616
GH16J050775 Enhancer 0.6 Ensembl ENCODE 6.9 -32.8 -32786 3.6 ZNF316 MAFF MAFK MAFG RNF2 EMSY SNX20 BRD7 ENSG00000205414 NOD2 ENSG00000261644 ENSG00000260616 CYLD LOC102724907
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000261644 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000261644 Gene

Genomic Locations for ENSG00000261644 Gene
chr16:50,727,417-50,742,815
(GRCh38/hg38)
Size:
15,399 bases
Orientation:
Minus strand
chr16:50,769,624-50,774,627
(GRCh37/hg19)
Size:
5,004 bases
Orientation:
Minus strand

Genomic View for ENSG00000261644 Gene

Genes around ENSG00000261644 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000261644 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000261644 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000261644 Gene

Proteins for ENSG00000261644 Gene

Post-translational modifications for ENSG00000261644 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000261644 Gene

Domains & Families for ENSG00000261644 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000261644 Gene

Function for ENSG00000261644 Gene

Phenotypes From GWAS Catalog for ENSG00000261644 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000261644 Gene

Localization for ENSG00000261644 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000261644 Gene

Pathways & Interactions for ENSG00000261644 Gene

PathCards logo

SuperPathways for ENSG00000261644 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ENSG00000261644 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000261644 Gene

Drugs & Compounds for ENSG00000261644 Gene

No Compound Related Data Available

Transcripts for ENSG00000261644 Gene

mRNA/cDNA for ENSG00000261644 Gene

6 RNACentral transcripts :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
3 NONCODE transcripts :
3 LncBook transcripts :
6 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000261644 Gene

No ASD Table

Relevant External Links for ENSG00000261644 Gene

GeneLoc Exon Structure for
ENSG00000261644

Expression for ENSG00000261644 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000261644 Gene

This gene is overexpressed in Whole Blood (x10.3) and Spleen (x5.5).

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000261644 Gene

Orthologs for ENSG00000261644 Gene

Evolution for ENSG00000261644 Gene

ENSEMBL:
Gene Tree for ENSG00000261644 (if available)
TreeFam:
Gene Tree for ENSG00000261644 (if available)

No data available for Orthologs for ENSG00000261644 Gene

Paralogs for ENSG00000261644 Gene

No data available for Paralogs for ENSG00000261644 Gene

Variants for ENSG00000261644 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000261644 Gene

Disorders for ENSG00000261644 Gene

No disorders were found for ENSG00000261644 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000261644 Gene

Publications for ENSG00000261644 Gene

No publications were found for ENSG00000261644 Gene.

No data available for Mastermind for ENSG00000261644 Gene

Products for ENSG00000261644 Gene

Sources for ENSG00000261644 Gene